| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,297,196 – 21,297,289 |
| Length | 93 |
| Max. P | 0.748421 |
| Location | 21,297,196 – 21,297,289 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.95 |
| Shannon entropy | 0.22107 |
| G+C content | 0.27738 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -11.67 |
| Energy contribution | -12.83 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21297196 93 - 27905053 UAAACAAAUCUUAAGAGAUUUGUUUGUAUU---------------GCAUAAAAUACAAACAAUUUGAUUUUCUUGUGCUGAAAUUAGUAUUACUGCUUAGUUUCACCA ...........(((((((.(((((((((((---------------......)))))))))))......)))))))((.(((((((((((....))).)))))))).)) ( -21.30, z-score = -3.07, R) >droSim1.chr3R 21126155 108 - 27517382 UAAACAAAUCUGAAGAGAUUUGUUUGUAUUUCCCAGUAUAAAUUACCAUAAAAUACAAACAAUAAGAUUUCCUUGUGCUGAAUUUAGUAGUACUGCUUAGUUUCACCG ..........(((((((((((((((((((((....(((.....)))....)))))))))))....))))))...((((((.......))))))........))))... ( -19.50, z-score = -2.37, R) >droSec1.super_13 83796 108 - 2104621 UAAACAAAUCUGAAGAGAUUUGUUUCUAUUUCCCAGUAUAAAUUACCAUAAAAUACAAACAAUAAGAUUUCCUUAUGCUGAAUUUAGUAGUACUGAUUAGUUUCACCG .((((((((((....))))))))))........((((((.......................((((.....))))(((((....)))))))))))............. ( -17.30, z-score = -2.14, R) >consensus UAAACAAAUCUGAAGAGAUUUGUUUGUAUUUCCCAGUAUAAAUUACCAUAAAAUACAAACAAUAAGAUUUCCUUGUGCUGAAUUUAGUAGUACUGCUUAGUUUCACCG ..............(((((((((((((((((....(((.....)))....)))))))))))).............(((((....)))))..........))))).... (-11.67 = -12.83 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:17 2011