| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,290,624 – 21,290,726 |
| Length | 102 |
| Max. P | 0.946333 |
| Location | 21,290,624 – 21,290,726 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.26 |
| Shannon entropy | 0.23100 |
| G+C content | 0.44614 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -20.40 |
| Energy contribution | -20.68 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21290624 102 - 27905053 UUUGCCACGCCCCCGCCUACAGCGGUGUCAAAAGAGUUGUCAACUUUAACUCGGCAGACAGAGCACACGCUAUUUUAUAAAUACACAUGUAUACACAUUCGC----------- ((((((..(.(.((((.....)))).).)....((((((.......))))))))))))...(((....))).........((((....))))..........----------- ( -22.70, z-score = -1.54, R) >droEre2.scaffold_4820 3716080 113 + 10470090 UUUGCCACGCCCCCGCCCACAUCGGUGUCAAAAGAGUGGUCAACUUCAACUCGGCAGAUACAGCACUUGCUAUUUUAUGGAUACCCAUGUAUAUAAACUGUAUACACAUCCGC ((((((.......((((......))))......((((((......)).))))))))))...(((....))).......((((.....(((((((.....))))))).)))).. ( -25.50, z-score = -0.91, R) >droYak2.chr3R 3638442 113 + 28832112 UUUGCCACGCCCCCGCCCACAGCGGUGUCAAAAGAGUUGUCAACUUCAACUCGGCAGACACAGCACAUGCUAUUUUAUAGAUACACAUGUAUAUAAAGUGUAUAUACAUCCGC ((((((..(.(.((((.....)))).).)....((((((.......))))))))))))...(((....)))...............(((((((((.....))))))))).... ( -29.20, z-score = -2.68, R) >droSec1.super_13 77186 113 - 2104621 UUUGCCACGCCCCCGCCCACAGCGGUGUCAAAAGAGUUGUCAACUUCAACUCGGCAGACAGAGCACACGCUAUUUUAUAAAUACACAUGUAUAUAAACUAUAUAUACAACCGU ((((((..(.(.((((.....)))).).)....((((((.......))))))))))))...(((....)))................((((((((.....))))))))..... ( -28.60, z-score = -3.62, R) >droSim1.chr3R 21119470 113 - 27517382 UUUGCCACGCCCCCGCCCACAGCGGUGUCAAAAGAGUUGUCAACUUCAACUCUGCAGACAGAGUACACGCUAUUUUAUAAAUACACAUGUAUAUAAACUAUAUAUACAACCGU ........((..((((.....))))((((...(((((((.......)))))))...))))........)).................((((((((.....))))))))..... ( -25.50, z-score = -2.87, R) >consensus UUUGCCACGCCCCCGCCCACAGCGGUGUCAAAAGAGUUGUCAACUUCAACUCGGCAGACAGAGCACACGCUAUUUUAUAAAUACACAUGUAUAUAAACUAUAUAUACAACCGC ((((((..(.(.((((.....)))).).)....((((((.......))))))))))))...(((....))).........((((....))))..................... (-20.40 = -20.68 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:16 2011