| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,613,212 – 8,613,291 |
| Length | 79 |
| Max. P | 0.867462 |
| Location | 8,613,212 – 8,613,291 |
|---|---|
| Length | 79 |
| Sequences | 8 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 80.72 |
| Shannon entropy | 0.37308 |
| G+C content | 0.34378 |
| Mean single sequence MFE | -14.11 |
| Consensus MFE | -7.74 |
| Energy contribution | -7.11 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8613212 79 + 23011544 UUCCUUUUCUUUUGCCUG-CUUCGUUUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU-AAU .............(((((-...(((......(((((((..(........).)))))))...)))...))))).....-... ( -12.80, z-score = -1.33, R) >dp4.chr4_group5 1370074 75 - 2436548 ----UUUCCUUUCGUUUC-UCCUUCAUCGU-UUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGUUUUUUUAAU ----...(((..(((.((-(..(((..(((-(((..........))))))..)))..))).)))....))).......... ( -14.40, z-score = -2.84, R) >droPer1.super_5 1340704 75 - 6813705 ----UUUCCUUUCGUUUC-UCCUUCAUCGU-UUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGUUUUUUUAAU ----...(((..(((.((-(..(((..(((-(((..........))))))..)))..))).)))....))).......... ( -14.40, z-score = -2.84, R) >droAna3.scaffold_12916 10251559 71 + 16180835 ----------UUCCUCUUUUAUUCUUUUGUACUGUCUGUUCUAUCAAAUGUCGGACAAGAUACGUGUUUUGGCUUUUUAAU ----------..................((((((((((..(........).))))).)).))).................. ( -7.30, z-score = 0.08, R) >droEre2.scaffold_4929 9203201 78 + 26641161 UUCCUUUUCUCUUGCCCC-UUCU-CAUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU-AAU .............((((.-....-(((.(((((..((((((...........))))))))))))))..)))).....-... ( -14.70, z-score = -2.70, R) >droYak2.chr2L 11255369 80 + 22324452 UUCCUUUUCUUUUGCCCGGCUUCUUUUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU-AAU .............(((((((....((((((..((((((......))))))....)))))).....))))))).....-... ( -17.90, z-score = -3.16, R) >droSec1.super_3 4092718 79 + 7220098 UUCCUUUUCUUUUGCCCG-CUUCGUUUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU-AAU .............(((((-...(((......(((((((..(........).)))))))...)))...))))).....-... ( -15.70, z-score = -2.37, R) >droSim1.chr2L 8395276 79 + 22036055 UUCCUUUUCUUUUGCCCG-CUUCGUUUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU-AAU .............(((((-...(((......(((((((..(........).)))))))...)))...))))).....-... ( -15.70, z-score = -2.37, R) >consensus UUCCUUUUCUUUUGCCCG_CUUCGUUUUGUAUUGUUUGUUCUAUCAAAUGUCGAACAAGAUACGUGUUGGGCUUUUU_AAU .............((((..........((((((...(((((...........))))).))))))....))))......... ( -7.74 = -7.11 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:29 2011