| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,270,911 – 21,270,966 |
| Length | 55 |
| Max. P | 0.879889 |
| Location | 21,270,911 – 21,270,966 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 68.43 |
| Shannon entropy | 0.64065 |
| G+C content | 0.39751 |
| Mean single sequence MFE | -11.63 |
| Consensus MFE | -6.22 |
| Energy contribution | -6.46 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.81 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21270911 55 - 27905053 AUGUAUCUCUCAGAUACUUGAGAGUGCCUCUCAGCCGAGUUGAGUGCAAUCGAAA ..(((((.....)))))((((...(((..((((((...)))))).))).)))).. ( -16.20, z-score = -1.92, R) >droWil1.scaffold_181089 5530965 53 + 12369635 --UAGUUCAAUUGAAGAACUUUUGUUUUAUCUCCUCCGAUUUGAUGCAUGUGAAA --.(((((.......)))))..(((.(((..((....))..))).)))....... ( -4.80, z-score = 0.52, R) >droPer1.super_6 3401457 50 + 6141320 ----AUUUAGAAGAUAUUAUAGGGUGCUGGUUA-UCGAAUUUCAUACAAUAGUAA ----........((((...(((....)))..))-))................... ( -3.70, z-score = 0.74, R) >droEre2.scaffold_4820 3695932 55 + 10470090 AUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGUCGAGCUGAGUGCAAUCGAAA ..(((((.....)))))((((...(((..(((((.....))))).))).)))).. ( -15.10, z-score = -1.28, R) >droYak2.chr3R 3617590 55 + 28832112 AUGUAUCUCUCAAAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAA ......(((((((....)))))))(((..((((((...)))))).)))....... ( -14.00, z-score = -1.96, R) >droSec1.super_13 56771 55 - 2104621 AUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAA ..(((((.....)))))((((...(((..((((((...)))))).))).)))).. ( -13.80, z-score = -1.31, R) >droSim1.chr3R 21099080 55 - 27517382 AUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAA ..(((((.....)))))((((...(((..((((((...)))))).))).)))).. ( -13.80, z-score = -1.31, R) >consensus AUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAA ......(((((((....)))))))(((..((((((...)))))).)))....... ( -6.22 = -6.46 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:12 2011