| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,251,476 – 21,251,569 |
| Length | 93 |
| Max. P | 0.907811 |
| Location | 21,251,476 – 21,251,569 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 93.91 |
| Shannon entropy | 0.11882 |
| G+C content | 0.35731 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -21.62 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.907811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21251476 93 + 27905053 AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUGCCCAGGCUAAUUGGCGGAAGAAGAGGAA (((((((((.........))))))))).(((((((((((((((((((((......)))))))..((....))....)))))).)))))))).. ( -27.10, z-score = -2.84, R) >droSim1.chr3R 21079499 93 + 27517382 AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUGCCCAGGCUAAUUGGCGGAAGAAGAGGAA (((((((((.........))))))))).(((((((((((((((((((((......)))))))..((....))....)))))).)))))))).. ( -27.10, z-score = -2.84, R) >droSec1.super_13 25351 93 + 2104621 AAUGAGUAACUUAUUCAAUUAUUUUUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUGCCCAGGCUAAUUGGCGGAAGAAGAGGAA ..((((((...))))))...........(((((((((((((((((((((......)))))))..((....))....)))))).)))))))).. ( -26.90, z-score = -2.65, R) >droYak2.chr3R 3598304 93 - 28832112 AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUACCCAGGCUAAUUGGCGGAAGAAGAGGAA (((((((((.........))))))))).(((((((((((((((((((((......)))))))...(....).....)))))).)))))))).. ( -23.40, z-score = -2.13, R) >droEre2.scaffold_4820 3676937 93 - 10470090 AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUGCCCAGGCUAAUUGGCGGAAGAAGAGGAA (((((((((.........))))))))).(((((((((((((((((((((......)))))))..((....))....)))))).)))))))).. ( -27.10, z-score = -2.84, R) >droAna3.scaffold_13340 14472851 92 - 23697760 AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUUCUCCGGAGCGGAAAAUAAUUUGCCUUUGGCCCGACUAAUUGGCAGAGCGGGGGAA- (((((((((.........)))))))))........(((((((..(((((......)))))(((((..((((....)))))))))))))))).- ( -18.80, z-score = 0.31, R) >consensus AAUGAGUAACUUAUUCAAUUAUUUAUUAUUUUUUCUCCGCCAGAGCGGAAAAUAAUUUGCUUUUGCCCAGGCUAAUUGGCGGAAGAAGAGGAA ..((((((...))))))...........(((((((((((((((((((((......)))))))..((....))....)))))).)))))))).. (-21.62 = -21.65 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:07 2011