| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,237,105 – 21,237,163 |
| Length | 58 |
| Max. P | 0.511075 |
| Location | 21,237,105 – 21,237,163 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 75.80 |
| Shannon entropy | 0.49934 |
| G+C content | 0.44968 |
| Mean single sequence MFE | -10.64 |
| Consensus MFE | -5.84 |
| Energy contribution | -6.11 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21237105 58 - 27905053 UUGCGGAUCCGGAUUCUCAGACACA-AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC ....((.....((((((((((....-.)))))....)))))....))............ ( -10.80, z-score = -1.08, R) >droSim1.chr3R 21064785 58 - 27517382 UUGCGGAUCCGGAUUCUCAGACACA-AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC ....((.....((((((((((....-.)))))....)))))....))............ ( -10.80, z-score = -1.08, R) >droSec1.super_13 10672 58 - 2104621 UUGCGGAUCCGGCUUCUCAGACACA-AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC ...((((((.(((...(((((....-.)))))....(......)))).).))))).... ( -11.60, z-score = -1.38, R) >droYak2.chr3R 3583349 58 + 28832112 UUGUGGAUCCGGAUUCUCAGACACA-AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC ((.(((.....((((((((((....-.)))))....)))))....))).))........ ( -12.30, z-score = -1.28, R) >droEre2.scaffold_4820 3662074 58 + 10470090 UUGUGGAUCCGGAUUCUCAGACACA-AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC ((.(((.....((((((((((....-.)))))....)))))....))).))........ ( -12.30, z-score = -1.28, R) >droAna3.scaffold_13340 14459675 51 + 23697760 CUGCGCAUCCGGGAUCCGAGACACA-AUC-GAAACGAAAU------CGGAAUCUGAAAG .........((((.(((((......-...-.........)------)))).)))).... ( -9.17, z-score = 0.01, R) >droWil1.scaffold_181089 5493413 58 + 12369635 UCACCAUUUCGAAUUUAAAUGCAUACGCCAAGGACUGAACCCA-AUAUCAAUCCGAGAG ......((((..........((....))...(((.(((.....-...))).))))))). ( -7.50, z-score = -1.38, R) >consensus UUGCGGAUCCGGAUUCUCAGACACA_AUCUGAAACAGAAUCAACGCCAGAAUCUGAAAC .........((((((((..........((((...)))).........)))))))).... ( -5.84 = -6.11 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:04 2011