| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,232,873 – 21,232,964 |
| Length | 91 |
| Max. P | 0.911979 |
| Location | 21,232,873 – 21,232,964 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.22 |
| Shannon entropy | 0.19601 |
| G+C content | 0.56355 |
| Mean single sequence MFE | -32.39 |
| Consensus MFE | -30.31 |
| Energy contribution | -30.71 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21232873 91 - 27905053 UUUCGGUGGUUGGCUCCGGAUUUUUCGCUGGU---GCCACCGAAACCAUUACAUUGCCU----CCCCAUCC---UGGGUAACUGAUGCCAUUGCCAUCAGC ((((((((((.....((((........)))).---))))))))))..............----.(((....---.)))...((((((.......)))))). ( -28.40, z-score = -1.17, R) >droSim1.chr3R 21060421 94 - 27517382 UUUCGGUGGUUGGCUCCGGAUUUUUCGGUGGU---GCCACCGAAACCAUUACAUUGCCU--UCCCCCACCCC--CCGGUAACUGAUGCCAGUGCCAUCAGC ....((((((((((..(((...((((((((..---..))))))))........(((((.--...........--..))))))))..))))..))))))... ( -32.24, z-score = -1.91, R) >droSec1.super_13 6321 98 - 2104621 UUUCGGUGGUUGGCUCCGGAUUUUUCGGUGGU---GCCACCGAAACCAUUACAUUGCCUGCACCCCCAUCCCCGCGGGUAAUUGAUGCCAGUGCGAUCAGC ((((((((((..((((((((...))))).)))---)))))))))).(((((.(((((((((............)))))))))))))).............. ( -34.60, z-score = -1.16, R) >droYak2.chr3R 3574444 92 + 28832112 UUUCGGUGGUUGGCUCUGGAUUUUUCGGUGGUGCCGCCACCGAAACCAUUACAUUGCCU-------CGCCCC--CGGGUAACUGAUGCCAUUGCCAUCAGC ....(((((((((((((((...(((((((((.....)))))))))))).....(((((.-------((....--)))))))..)).))))..))))))... ( -36.10, z-score = -2.41, R) >droEre2.scaffold_4820 3657713 88 + 10470090 UUUCGGUGGUUGGCUCUGGAUUUUUCGGCGGU---GCCACCGAAACCAUUACAUUGCCU-------CG-CCC--CGGGUAACUGAUGCCAGUGCCAUCAGC ....(.((((.(((.((((...((((((.(..---..).)))))).(((((..((((((-------..-...--.)))))).))))))))).))))))).) ( -30.60, z-score = -0.93, R) >consensus UUUCGGUGGUUGGCUCCGGAUUUUUCGGUGGU___GCCACCGAAACCAUUACAUUGCCU____CCCCACCCC__CGGGUAACUGAUGCCAGUGCCAUCAGC ....((((((((((..(((...(((((((((.....)))))))))........((((((................)))))))))..))))..))))))... (-30.31 = -30.71 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:03 2011