| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,222,673 – 21,222,793 |
| Length | 120 |
| Max. P | 0.855267 |
| Location | 21,222,673 – 21,222,793 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.17 |
| Shannon entropy | 0.25318 |
| G+C content | 0.68167 |
| Mean single sequence MFE | -55.60 |
| Consensus MFE | -42.35 |
| Energy contribution | -45.12 |
| Covariance contribution | 2.77 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21222673 120 + 27905053 GAGUGCCGACGAAGGUGGCGGCGGCGGUGGUACAGCAACUGUGGGCGGGGAUGAGGGCGCAGAUGAUGGAGCUGCCGGCGAUGAGCCGCCUGCCGAUGAUGCCGCAGUUGCCACACUUCC ..........((((((((((((.(((((..(((((...)))))((((((......(((((..........)).)))(((.....))).))))))......))))).)))))))).)))). ( -53.40, z-score = -1.08, R) >droSim1.chr3R 21052230 120 + 27517382 GAGUGGCGACGAAGGUGGCGACGGCGGUGGUGCAGCAACUGUGGGCGGGGAUGAGGGCGCAGAUGAUGGAGCUGCCGGCGAUGAGCCGCCUGCCGAUGAUGCCGCCGUUGCCACACUUCC ..........(((((((((((((((((((((......)))((.((((((......(((((..........)).)))(((.....))).)))))).))...)))))))))))))).)))). ( -59.60, z-score = -2.76, R) >droSec1.super_33 476556 120 + 478481 GAGUGGCGACGAAGGUGGCGGCGGCGGUGGUGCAGCAACUGUGGGCGGGGAUGAGGGCGCAGAUGAUGGAGCUGCCGGCGAUGAGCCGCCUGCCGAUGAUGCCGCCGUUGCCACACUUCC (((((((.((....)).))((((((((((((((((...)))).((((((......(((((..........)).)))(((.....))).))))))......)))))))))))).))))).. ( -59.80, z-score = -2.34, R) >droYak2.chr3R 3563774 96 - 28832112 AAGUGGCGACGAAGGUGG------CGGUGGUGCAGCAGCUGUGGGCGUGGAUGAUGGUG------------------GCGCUGUGCCGCCUGCCGAUGAUGCCGCCGUUGCCACACUUCC ..(((((((((..(((((------((((((..((((.((..(.(.((....)).).)..------------------))))))..))))).)))......)))..)))))))))...... ( -49.20, z-score = -2.46, R) >droEre2.scaffold_4820 3647346 120 - 10470090 GAGUGGCGACGAUGGUGGUGGGGGCGGUGGUGCAGCAGCUGUGGGCGGGGAUGAGGGCGCUGAUGAUGGUGCCGCCGGCGAUGUGACGCCUGCCGAUGAUGCCGCCGUUGCCACACUUCC ..((((((((...(((((((....((((((((..(((..(((.(((.........((((((......))))))))).))).)))..)))).))))....)))))))))))))))...... ( -56.00, z-score = -1.17, R) >consensus GAGUGGCGACGAAGGUGGCGGCGGCGGUGGUGCAGCAACUGUGGGCGGGGAUGAGGGCGCAGAUGAUGGAGCUGCCGGCGAUGAGCCGCCUGCCGAUGAUGCCGCCGUUGCCACACUUCC ..........(((((((((((((((((((((......)))((.((((((......(((((..........)).)))(((.....))).)))))).))...)))))))))))))).)))). (-42.35 = -45.12 + 2.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:02 2011