| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,214,093 – 21,214,241 |
| Length | 148 |
| Max. P | 0.680956 |
| Location | 21,214,093 – 21,214,241 |
|---|---|
| Length | 148 |
| Sequences | 6 |
| Columns | 149 |
| Reading direction | reverse |
| Mean pairwise identity | 84.29 |
| Shannon entropy | 0.30194 |
| G+C content | 0.49334 |
| Mean single sequence MFE | -46.02 |
| Consensus MFE | -29.44 |
| Energy contribution | -32.23 |
| Covariance contribution | 2.79 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21214093 148 - 27905053 ACAUCAGCAUGGGCUUGAGCCUUAGCUUUGGCCAUAGCUUUUGCUAUAGCUUCACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUUCCACUUGAAGCGUAAUGAAAGCAUUU-UUGCCACUAACACA .....(((...((((.((((....)))).))))(((((....))))).)))........((((((((((....)))))).(((((((((((((((.((....))....)))))))..))))..)))).......-.))))......... ( -48.20, z-score = -2.21, R) >droSim1.chr3R 21043320 148 - 27517382 ACAUCAUCAUGGGCUUGAGCCUUAGCUCUGGCCAUAGCUUUUGCUAUAGCUUCACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUUCCACUUGAAGCGUAAUGAAAGCAUUU-UUGCCACUAACACA ........(((((((.((((....)))).))))(((((....)))))........))).((((((((((....)))))).(((((((((((((((.((....))....)))))))..))))..)))).......-.))))......... ( -47.30, z-score = -2.45, R) >droSec1.super_33 468144 136 - 478481 ACAUCAGCAUGGGCUUGAGCCUUAGCUCUGGCCAUAG------------CUUCACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUUCCACUUUAAGCGUAAUGAAAGCAUUU-UUGCCACUAACACA .....(((...((((.((((....)))).))))...)------------))........((((((((((....)))))).((((((((.((((((.((....))....))))))...))))..)))).......-.))))......... ( -42.30, z-score = -2.12, R) >droYak2.chr3R 3555001 148 + 28832112 ACAUAAGCAUGGGCUUGAGCCUUAGCUUUGGCCAUAGCUUUUGCUAUAGCUUUACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUGCCACUUGAAGCGUAAUCAAAGCAUUU-UUGCCACUAACACA ....((((...((((.((((....)))).))))(((((....))))).)))).......((((((((((....)))))).....((((((((((((((....))...))))))))..)))).............-.))))......... ( -50.90, z-score = -2.76, R) >droEre2.scaffold_4820 3638627 148 + 10470090 ACAUCAGCAUGGACUUGAGCCUUAGUUCUGGCCAUAGCUUUUGCUAUAGCUUAACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUUCCACUUGAAGCGUAAUGAAAGCAUUU-UUCCCACUAACACA ......((.(((((....(((...(((..(((.(((((....))))).))).)))....))).((((((....)))))))))))(((((((((((.((....))....)))))))..)))).......))....-.............. ( -43.50, z-score = -2.11, R) >droMoj3.scaffold_6540 22733787 142 - 34148556 ACAUCAAGAAAAGUGU-UGCAUAUUUUUAGGCUGCAGCUUGUGC----GCUCGUUCAUGGCCGGC-GCUGCAGCUCAACG-UCAACGUCAAGUGGCCCACUCGGUGUUGCACUUGAACCAUAAUGAAAGCAUUUGCUGCCAUCAGCACA ............((((-(((.((....)).)).(((((..((((----..(((((.((((..(((-(.((.....)).))-))....(((((((((((....)).))..))))))).)))))))))..))))..)))))....))))). ( -43.90, z-score = 0.21, R) >consensus ACAUCAGCAUGGGCUUGAGCCUUAGCUCUGGCCAUAGCUUUUGCUAUAGCUUCACCAUCGGCAGCGGCUUCAAAGUCGCGUUCAACGUCAAGUGGCCCACUCGGCAUUCCACUUGAAGCGUAAUGAAAGCAUUU_UUGCCACUAACACA ...........((((.((((....)))).))))(((((....)))))............((((((((((....)))))).(((((((((((((((.((....))....))))))))..)))..)))).........))))......... (-29.44 = -32.23 + 2.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:01 2011