| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,605,848 – 8,605,954 |
| Length | 106 |
| Max. P | 0.951390 |
| Location | 8,605,848 – 8,605,954 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 55.59 |
| Shannon entropy | 0.58124 |
| G+C content | 0.35618 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -12.28 |
| Energy contribution | -10.63 |
| Covariance contribution | -1.65 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8605848 106 + 23011544 -UACCGGUUUAAUCAGUUUGUUUGUUAACUUAAUAUCUUAGAGCAAUGUGCUUACAUUUUAACAAAACACAGUACUAGUAAUAAGCGAAGUUAAAUACCAGCAUUAG -....(((......(.(((((((((((.............((((.....))))........((........)).....))))))))))).).....)))........ ( -14.30, z-score = 0.61, R) >dp4.chr4_group5 1360803 90 - 2436548 AUGCCAGCAUAAAUAUGCUGCGUGCUCUUUAGAAACGUUUUAUGGAAGUA-UUCCGAUAUGAAAUAUUGUAGUGCUUUGAAUCAGCACGAG---------------- ....((((((....))))))(((((((....)).........(.((((((-((.((((((...)))))).)))))))).)....)))))..---------------- ( -23.20, z-score = -1.80, R) >droPer1.super_5 1331424 90 - 6813705 AUGCCAGCAUAAAUAUGCUGCGUGCUCUUUAGAAACGUUUUAUGGAAGUA-UUGCGAUAGGAAAUAUUGUAGUGCUUUGAAUCAGCACGAG---------------- ....((((((....))))))(((((((....)).........(.((((((-((((((((.....)))))))))))))).)....)))))..---------------- ( -28.40, z-score = -3.00, R) >consensus AUGCCAGCAUAAAUAUGCUGCGUGCUCUUUAGAAACGUUUUAUGGAAGUA_UUACGAUAUGAAAUAUUGUAGUGCUUUGAAUCAGCACGAG________________ ....((((((....))))))((((((...((((.....))))..((((((....(((((.....)))))...)))))).....)))))).................. (-12.28 = -10.63 + -1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:28 2011