| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,194,687 – 21,194,741 |
| Length | 54 |
| Max. P | 0.968464 |
| Location | 21,194,687 – 21,194,741 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 95.99 |
| Shannon entropy | 0.06359 |
| G+C content | 0.31944 |
| Mean single sequence MFE | -10.54 |
| Consensus MFE | -10.27 |
| Energy contribution | -9.84 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21194687 54 - 27905053 UGCUUUUAGCUCAGUUUAAUUUCCGUUUAUUUGAACUGUGUUAUUUUCGAGGCA .(((((((((.((((((((...........)))))))).)))).....))))). ( -13.80, z-score = -3.44, R) >droSim1.chr3R 21023218 54 - 27517382 UGCUUUUAGCUUAGUUUUAUUUCCGUUUAUUUGAACUGUGUUAUAUUCGAGGCA .(((((((((.((((((...............)))))).)))).....))))). ( -8.76, z-score = -1.22, R) >droSec1.super_33 448712 54 - 478481 UGCUUUUAGCUUAGUUUUAUUUCCGUUUAUUUGAACUGUGUUAUUUUCAAGGCA .(((((((((.((((((...............)))))).)))).....))))). ( -8.36, z-score = -1.16, R) >droYak2.chr3R 3533965 54 + 28832112 UGCUUUUAGCUCAGUUUUAUUUCCGUUUAUUUGAACUGUGUUAUUUUCGAGGCA .(((((((((.((((((...............)))))).)))).....))))). ( -11.26, z-score = -2.44, R) >consensus UGCUUUUAGCUCAGUUUUAUUUCCGUUUAUUUGAACUGUGUUAUUUUCGAGGCA .(((((((((.((((((...............)))))).)))).....))))). (-10.27 = -9.84 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:00 2011