| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,146,261 – 21,146,322 |
| Length | 61 |
| Max. P | 0.765448 |
| Location | 21,146,261 – 21,146,322 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 54.10 |
| Shannon entropy | 0.67309 |
| G+C content | 0.30429 |
| Mean single sequence MFE | -11.73 |
| Consensus MFE | -7.55 |
| Energy contribution | -7.00 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.23 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21146261 61 + 27905053 UUAUAACUCUGUGUAGUACGCCAUAAAAUCAAGGUAUAUAUACAUACAUACGUAUGUGUGU ..........((((((((..((..........))..))).)))))((((((....)))))) ( -10.60, z-score = 0.25, R) >droVir3.scaffold_12855 5451194 59 + 10161210 UCCUGAUUGUAUACGGUUCUCAUUAGUGU--AUAUAUAUAUAUAUAUGUGUGCAUGUGUGU ....(((((....)))))..(((..((((--((((((((....))))))))))))..))). ( -12.40, z-score = -0.21, R) >droPer1.super_1 9353560 54 - 10282868 -------UGAAUCUGGUCAAUAUGUAGAUGGAACUAUAUGUACAUACAUAUGUAUGUAUGU -------............((((((((......))))))))((((((((....)))))))) ( -12.20, z-score = -0.72, R) >consensus U__U_A_UGUAUAUGGUACACAUUAAAAU__AAAUAUAUAUACAUACAUAUGUAUGUGUGU .....................................((((((((((....)))))))))) ( -7.55 = -7.00 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:57 2011