| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,049,551 – 21,049,656 |
| Length | 105 |
| Max. P | 0.882529 |
| Location | 21,049,551 – 21,049,656 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.49469 |
| G+C content | 0.29942 |
| Mean single sequence MFE | -17.95 |
| Consensus MFE | -6.45 |
| Energy contribution | -7.37 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21049551 105 + 27905053 AACGCAUUAAUCUUAAAGUAAUGCCAAGCAAAUAUGCUUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUCCAAGUAUCUU-ACACCCCUGAGAG ...((((((.........)))))).(((((....))))).....(((((((.((((((....)))))).)))))))............((((-(......))))). ( -19.70, z-score = -2.62, R) >droAna3.scaffold_13340 1242136 87 + 23697760 ------------AAAGAGUUCUAUUCAACGUCUCUACAAAUAAGUCAUUUGGCUAAAAUUAUUUGGAACAUGUAG----UUCCAC---UCUUUCCACAACAGAAAU ------------(((((((.......................((((....))))..........(((((.....)----))))))---)))))............. ( -14.70, z-score = -1.74, R) >droEre2.scaffold_4820 3475078 106 - 10470090 AACGCAUUAAUCUUAAAAUAAUUCCAGGAAAUUAUGAUUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUAAAGAUACUUUUCCACCCCUGAGAG ..........................(((((.(((..(((((..(((((((.((((((....)))))).)))))))..)))))..)))..)))))........... ( -18.40, z-score = -2.41, R) >droYak2.chr3R 3390698 106 - 28832112 AACGCAUUAAUCCUAAAAUAUUUCCAGGCAAAUAUGCCUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUUAAAGUAACUUUCCACCCCAGAGAG .((.....((((.........(((.(((((....)))))..)))(((((((.((((((....)))))).))))))))))).....))..(((((.......))))) ( -20.20, z-score = -3.40, R) >droSec1.super_33 310201 106 + 478481 AACGCAUUAAUCUUAAAAUAAUUCCAAGCAAAUAUGCAUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUCUAAGUAUCUUUACACCCCUGAGAG ..........(((((............(((....)))...(((((((((((.((((((....)))))).)))))))...))))..(((....))).....))))). ( -17.00, z-score = -2.18, R) >droSim1.chr3R 20874518 106 + 27517382 AACGCAUUAAUCUUAAAAUAAUUCCAAGCAAAUAUGCUUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUCCAAGUAUCUUUACACCCCUGAGAG ..........(((((......(((.(((((....)))))..)))(((((((.((((((....)))))).))))))).........(((....))).....))))). ( -17.70, z-score = -2.67, R) >consensus AACGCAUUAAUCUUAAAAUAAUUCCAAGCAAAUAUGCUUAAGAAACUAUAGCUUCAAUUCAUAUUGAAUUUAUAGUGAUUUCCAAGUAUCUUUACACCCCUGAGAG ............................................(((((((.((((((....)))))).))))))).............................. ( -6.45 = -7.37 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:53 2011