Locus 11431

Sequence ID dm3.chr3R
Location 21,035,655 – 21,035,748
Length 93
Max. P 0.692479
window15716

overview

Window 6

Location 21,035,655 – 21,035,748
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.81
Shannon entropy 0.32290
G+C content 0.43331
Mean single sequence MFE -28.93
Consensus MFE -19.05
Energy contribution -19.97
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.43
SVM RNA-class probability 0.692479
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 21035655 93 + 27905053
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU-ACUUGCACAAGCUAACAAAAAGGCUUUAUGUCUGUACUUGUGCCAGAAAGUUUGGGG--------------------------
...(((((.((((((((...(((((((((((((...-..))))))(((((........)))))..))).))))...))))))))...)))))..-------------------------- ( -29.20, z-score =  -1.87, R)
>droAna3.scaffold_13340 6900188 119 + 23697760
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU-ACUUUCCCAAGCACACAUAAAGCCCUUCUGUCUGCCGGUGUUCUCUGUAGCAGAAAAAAAAGAUAUAUAUAGAAACUUUGGAG
((((.........(((....)))....((((.....-..........)))).......))))(((((.((((.((......)))))))))))............................ ( -23.16, z-score =   1.21, R)
>droEre2.scaffold_4820 3461174 94 - 10470090
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU-ACUUGCACAAGCUAACAAAAGGGCUUUAUGUCUGUACUUGUGCCAAAAAGUUUUUGGG-------------------------
...((((((((((((((...(((((((((((((...-..))))))(((((........)))))..))).))))...))))))))....)))))).------------------------- ( -28.50, z-score =  -1.75, R)
>droYak2.chr3R 3376810 95 - 28832112
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUUUACUUGCACAAGCUAACAAAAGGGCUUUAUGUCUGUACUUGUGCCAAAAAGUUUUCGGG-------------------------
...((((((((((((((...(((((((((((((......))))))(((((........)))))..))).))))...))))))))....)))))).------------------------- ( -30.70, z-score =  -2.65, R)
>droSec1.super_33 296257 93 + 478481
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU-ACUUGCACAAGCUAACAAAAAGGCUUUAUGUCUGUACUUGUGCCAGAAAGUUUCGGG--------------------------
...((((((((((((((...(((((((((((((...-..))))))(((((........)))))..))).))))...))))))...)))))))).-------------------------- ( -31.00, z-score =  -2.71, R)
>droSim1.chr3R 20860524 93 + 27517382
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU-ACUUGCACAAGCUAACAAAAAGGCUUUAUGUCUGUACUUGUGCCAGAAAGUUUCGGG--------------------------
...((((((((((((((...(((((((((((((...-..))))))(((((........)))))..))).))))...))))))...)))))))).-------------------------- ( -31.00, z-score =  -2.71, R)
>consensus
GGGCCGGAAUUUGGCAUUUUUGCAACGGUGCAAUUU_ACUUGCACAAGCUAACAAAAAGGCUUUAUGUCUGUACUUGUGCCAGAAAGUUUCGGG__________________________
.........((((((((...(((((((((((((......))))))(((((........)))))..))).))))...)))))))).................................... (-19.05 = -19.97 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:52 2011