| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,027,537 – 21,027,627 |
| Length | 90 |
| Max. P | 0.926721 |
| Location | 21,027,537 – 21,027,627 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 72.50 |
| Shannon entropy | 0.47309 |
| G+C content | 0.48604 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -18.72 |
| Energy contribution | -20.28 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21027537 90 + 27905053 UGCACUCUAUUCUACAUACGUGCUCAUAAAAAAGGGCUCAGUGUGGAGCUCUGGAAUGUGGUAUAUCGAGUGGGUGGUGGACAUCCACCC------ ..((((((((.((((((.((....).......(((((((......))))))).).)))))).)))..)))))...(((((....))))).------ ( -29.00, z-score = -1.53, R) >droAna3.scaffold_13340 6892076 71 + 23697760 ----GUCCACUU----UACGUGCUCAUAAAAAAAAA------GGUAAAUUGUGGAA-AUGGUUUUUGGGGGAUGUGGCACAUGCCA---------- ----.(((((((----(((.(..............)------.)))))..))))).-...........((.(((.....))).)).---------- ( -13.54, z-score = 0.56, R) >droEre2.scaffold_4820 3453164 92 - 10470090 UGUAGUCCACUC----UACGUGCUCAUAAAAAAGAGCUCAGUGUGGAGCUCUGGAAUGUGGUAUAUCGAGUGGGUGGAGGACCUCCUGCCACUCCC ......((((((----.(..(((.((((....(((((((......)))))))....)))))))..).))))))(((((((....))).)))).... ( -37.00, z-score = -3.40, R) >droSec1.super_33 288277 90 + 478481 UGCAGACCAUUCUACAUACGUGCUCAUAAAAAUGGGCUCAGUGUGGAGCUCUGGAAUGUGGUAUAUCGAGUGGGUGGUGGCCAUCCACCC------ .(((..(((((((((((..(.((((((....)))))).).))))))))...)))..)))..........((((((((...))))))))..------ ( -30.70, z-score = -1.22, R) >droSim1.chr3R 20852500 90 + 27517382 UGCAGACCAUUCUACAUACGUGCUCAUAAAAAAGGGCUCAGUGUGGAGCUCUGGAAUGUGGUAUAUCGAGUGGGUGGUGGACAUCCACCC------ ......((((((.......((((.((((....(((((((......)))))))....))))))))...))))))..(((((....))))).------ ( -30.50, z-score = -1.66, R) >consensus UGCAGUCCAUUCUACAUACGUGCUCAUAAAAAAGGGCUCAGUGUGGAGCUCUGGAAUGUGGUAUAUCGAGUGGGUGGUGGACAUCCACCC______ ......((((((.......((((.((((....(((((((......)))))))....))))))))...))))))..(((((....)))))....... (-18.72 = -20.28 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:50 2011