| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,026,169 – 21,026,277 |
| Length | 108 |
| Max. P | 0.843050 |
| Location | 21,026,169 – 21,026,277 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 62.01 |
| Shannon entropy | 0.67066 |
| G+C content | 0.43551 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -8.19 |
| Energy contribution | -10.61 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21026169 108 - 27905053 GCAUAUUUAAUGAGCUGGAUCCUUGUGGGCU-UACAUAUGCGAGCACUCCGAAAAAUCCUCACAAUCCAGUCAAGCGGGAUUGCUGCCUUAAAAGAAAAAUAUGCCAUG ((((((((..(((.((((((...((((((((-..(....)..))).....((....)).)))))))))))))).((((.....))))..........)))))))).... ( -27.70, z-score = -1.29, R) >droWil1.scaffold_181130 5801891 88 - 16660200 ------CCAUUGCCCGGCAAUCGCACGGGCCAUGCCCAUGCGAAUGCCUUUACACGUGUUUGUGUGUGUG---AGUGUGUUAACAUACAUAUAUAUA------------ ------.........((((.(((((.((((...)))).))))).))))............((((((((((---.((((....)))).))))))))))------------ ( -33.90, z-score = -2.80, R) >droYak2.chr3R 3367132 82 + 28832112 GCAUAUUUAAUGAGCUGGAUCCUUGUGGGCU-UACAUAUGCGAAUACUCCGAAAAGUUCUCACAAUCCAGUU-CGCAGGAUAUA------------------------- ..((((((..((((((((((...((((((..-.((.....((.......))....)).))))))))))))))-))..)))))).------------------------- ( -22.70, z-score = -2.25, R) >droSec1.super_33 286923 107 - 478481 GCAUAUUUAAUGAGCUGGAUCCUUGUGGGCU-UACAUAUGCGAGCACUCCGAAAAAUCCUUAAAAUCCAGUC-AGCUGGAUUGCUGGCUUAAAAGAAAAAUGUGCCAUG ((((((((..((((((((((..(((..((((-..(....)..))).)..)))...))))....(((((((..-..)))))))...))))))......)))))))).... ( -31.30, z-score = -2.47, R) >droSim1.chr3R 20851138 107 - 27517382 GCAUAUUUAAUGAGCUGGAUCCUUGUGGGCU-UACAUAUGCGAGCACUCCGAAAAAUCCUUAAAAUCCAGUC-AGCUGGAUGGCUGGCUUAAAAGAAAAAUGUGCCAUG ((((((((..((((((((((..(((..((((-..(....)..))).)..)))...)))).....((((((..-..))))))....))))))......)))))))).... ( -30.40, z-score = -1.86, R) >consensus GCAUAUUUAAUGAGCUGGAUCCUUGUGGGCU_UACAUAUGCGAGCACUCCGAAAAAUCCUUAAAAUCCAGUC_AGCGGGAUAGCUGGCUUAAAAGAAAAAU_UGCCAUG ((((((((.....((((((...(((((((.............................)))))))))))))...(((((....))))).........)))))))).... ( -8.19 = -10.61 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:49 2011