| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,008,164 – 21,008,251 |
| Length | 87 |
| Max. P | 0.958851 |
| Location | 21,008,164 – 21,008,251 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 77.52 |
| Shannon entropy | 0.40456 |
| G+C content | 0.51941 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -22.82 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21008164 87 + 27905053 AGGCUGC--UUGGCUUUUUAGUGGCAAGGAUAUG--UUUCUUGCCAAUGCGGCCCC-------AUGCCGGCCAUCUAUACUCGUGGUCGUCCGUAGUC .((((((--..((((......(((((((((....--.)))))))))....))))..-------....(((((((........)))))))...)))))) ( -33.30, z-score = -2.52, R) >droSim1.chr3R 20832935 84 + 27517382 AGGCUGC--UUGGCUUUUUAGUGGCAAGGAUAUG--UUUCUUGCCAAUGCGGCCCC-------AUGCCGGCCAUCUGUACUCGUGGUCCUCCGUA--- .(((...--..((((......(((((((((....--.)))))))))....))))..-------..)))((((((........)))))).......--- ( -30.00, z-score = -1.40, R) >droSec1.super_33 268793 84 + 478481 AGGCUGC--UUGGCUUUUUAGUGGCAAGGAUAUG--UUUCUUGCCAAUGCGGCCCC-------AUGCCGGCCAUCUGUACUCGUGGUCGUCCGUA--- .((((((--...(((....)))((((((((....--.))))))))...))))))..-------(((.(((((((........)))))))..))).--- ( -32.50, z-score = -2.16, R) >droEre2.scaffold_4820 3430131 87 - 10470090 AGGCUGC--UUGGCUUUUUAGUGGCAAGGAUAUG--UUUCUUGCCAAUGCGGCCCC-------AUGCCGGCCAUCUGUACUCGUGGUCGUCCGUAGUC .((((((--..((((......(((((((((....--.)))))))))....))))..-------....(((((((........)))))))...)))))) ( -33.30, z-score = -2.34, R) >droAna3.scaffold_13340 6871143 80 + 23697760 AGGCUGC--UUGGCUUUUUAGUGGCAAGGAUAUG--UUUCUUGCCAAUGCGGCCCC-------AUGCCGGCCAUCUGUAGUCCUAGCCAGA------- (((((((--.((((.......(((((((((....--.)))))))))...((((...-------..))))))))...)))).))).......------- ( -32.70, z-score = -2.15, R) >droMoj3.scaffold_6540 31792769 97 - 34148556 AAGCUGCGUCUGGCUUUUUAGCAAUUCGAAUAUGAACUUCUUGUCCACGAUGCUUAUAUGAUAAUGUCAGCUAUGUGUUUGCCUGAUGUUUUUCAGC- ..((((((((.(((......(((((((......)))....)))).((((..(((.((((....)))).)))..))))...))).)))).....))))- ( -19.20, z-score = 0.20, R) >consensus AGGCUGC__UUGGCUUUUUAGUGGCAAGGAUAUG__UUUCUUGCCAAUGCGGCCCC_______AUGCCGGCCAUCUGUACUCGUGGUCGUCCGUA___ .((((((.....(((....)))((((((((.......))))))))...))))))..............((((((........)))))).......... (-22.82 = -23.27 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:46 2011