| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,000,316 – 21,000,408 |
| Length | 92 |
| Max. P | 0.945589 |
| Location | 21,000,316 – 21,000,408 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.57 |
| Shannon entropy | 0.40570 |
| G+C content | 0.54181 |
| Mean single sequence MFE | -34.79 |
| Consensus MFE | -21.57 |
| Energy contribution | -22.57 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21000316 92 - 27905053 UUGUGACCC----GCGGUGGCAGU----------GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .........----..(((((((((----------(((((((((((....)))))))..........((.(((((....))))).))))))))-----.)))))))......------ ( -37.00, z-score = -2.23, R) >droWil1.scaffold_181130 5767569 101 - 16660200 UUGCGACCCGCGAGCGUU----------------AGCUGCCUUUCAGCAGGGUGGCAACUGGAAGUGAUUCUGUCUCGCCAGACUUUGUUGCUGCCAUUGCCACCCUUUCUGUUUCU ..(((...)))((((...----------------.((((.....))))((((((((((.(((.((..((...((((....))))...))..)).)))))))))))))....)))).. ( -39.10, z-score = -2.91, R) >droPer1.super_3 7160853 90 + 7375914 UUCUGACCCGCGAGCGGU----------------GGAAACCAUUCACCAGGGUGGCAACUGAAAGUGAUUCUGCCUCGGCAGACUCUGUUAC-----UUUCCACCCUUUUA------ ...............(((----------------(((.....))))))(((((((......(((((((((((((....)))))....)))))-----))))))))))....------ ( -30.90, z-score = -2.45, R) >dp4.Unknown_group_4 121690 90 + 150280 UUCUGACCCGCGAGCGGU----------------GGAAACCAUUCACCAGGGUGGCAACUGAAAGUGAUUCUGCCUCGCCAGACUCUGUUAC-----UUUCCACCCUUUUA------ ...............(((----------------(((.....))))))(((((((......((((((((((((......))))....)))))-----))))))))))....------ ( -25.50, z-score = -1.16, R) >droAna3.scaffold_13340 6863025 90 - 23697760 UUGUGACCCGCGAGCGGU----------------GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .(((.((((....).)))----------------.)))((......))((((((((((.(((....((.(((((....))))).))..))).-----))))))))))....------ ( -37.70, z-score = -3.01, R) >droEre2.scaffold_4820 3422186 106 + 10470090 UUGUGACCCGCGAGCGGUGGCGGCGGCAGUGGCAGGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .(((.((((....).))).)))((.(.((((((.....))))))).))((((((((((.(((....((.(((((....))))).))..))).-----))))))))))....------ ( -46.10, z-score = -2.02, R) >droYak2.chr3R 3338249 96 + 28832112 UUGUGACCCGCGAGCGGUGGCAGU----------GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .(((.((((....).))).)))((----------(((.(((((((....)))))))......((((((((((((....)))))....)))))-----))))))).......------ ( -38.70, z-score = -2.08, R) >droSec1.super_33 260850 96 - 478481 UUGUGACCCGCGAGCGGUGGCAGU----------GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .(((.((((....).))).)))((----------(((.(((((((....)))))))......((((((((((((....)))))....)))))-----))))))).......------ ( -38.70, z-score = -2.08, R) >droSim1.chr3R 20824980 96 - 27517382 UUGUGACCCGCGAGCGGUGGCAGU----------GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC-----UUGCCACCCUUUUU------ .(((.((((....).))).)))((----------(((.(((((((....)))))))......((((((((((((....)))))....)))))-----))))))).......------ ( -38.70, z-score = -2.08, R) >droMoj3.scaffold_6540 31785563 82 + 34148556 UCGCAGUUCGCAGUCCGC---------------UGUUCGCUGUUCGC--AACUCGCAGCGUAAAGUGUUCUUGUC-------AGUCUUUCAU-----UUGCCACCCUUUUU------ ..((((...((((..(((---------------(...((((((....--.....))))))...))))..).))).-------..........-----))))..........------ ( -15.54, z-score = -0.47, R) >consensus UUGUGACCCGCGAGCGGU________________GGCAGCCAUUCAGCAGGGUGGCAACUGAAAGUGAUUCUGUCUCGGCAGACUCUGUUAC_____UUGCCACCCUUUUU______ .....((((....).)))..............................((((((((((......(((((...((((....))))...))))).....)))))))))).......... (-21.57 = -22.57 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:44 2011