| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,993,685 – 20,993,799 |
| Length | 114 |
| Max. P | 0.983243 |
| Location | 20,993,685 – 20,993,799 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.96 |
| Shannon entropy | 0.18386 |
| G+C content | 0.44452 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -26.40 |
| Energy contribution | -26.15 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20993685 114 - 27905053 UACAGUUGUGUAAAUACAC---UAGCGGCCAACGCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACA-- ......((((((..(((..---..(((((....)))))..-.....((((.(((.........)))..))))...((((((((....((....)).....)))))))).)))))))))-- ( -29.30, z-score = -2.76, R) >droEre2.scaffold_4820 3415390 114 + 10470090 UACAGUUGUGUAAAUACAC---UAGCGGCCAACGCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACA-- ......((((((..(((..---..(((((....)))))..-.....((((.(((.........)))..))))...((((((((....((....)).....)))))))).)))))))))-- ( -29.30, z-score = -2.76, R) >droYak2.chr3R 3330677 116 + 28832112 UACAGUUGUGUAAAUACAC---UAGCGGCCAACGCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACACA ......(((((..((((..---..(((((....)))))..-.....((((.(((.........)))..))))...((((((((....((....)).....)))))))).))))..))))) ( -30.10, z-score = -3.08, R) >droSec1.super_33 254288 114 - 478481 UACAGUUGUGUAAAUACAC---UAGCGGCCAACGCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACA-- ......((((((..(((..---..(((((....)))))..-.....((((.(((.........)))..))))...((((((((....((....)).....)))))))).)))))))))-- ( -29.30, z-score = -2.76, R) >droSim1.chr3R 20818383 114 - 27517382 UACAGUUGUGUAAAUACAC---UAGCGGCCAACGCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACA-- ......((((((..(((..---..(((((....)))))..-.....((((.(((.........)))..))))...((((((((....((....)).....)))))))).)))))))))-- ( -29.30, z-score = -2.76, R) >droPer1.super_3 7150778 117 + 7375914 UACAGUUGUGUAAAUACAC---UAGCGGACAACGCCGCGGUCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUUUCCCUAUUUACGCGAAGUAUACACACA ....((((...(((((((.---..((((......))))(....).......)))))))...)))).......((.((((((((...(((......)))..)))))))).))......... ( -30.90, z-score = -3.36, R) >dp4.Unknown_group_4 112701 117 + 150280 UACAGUUGUGUAAAUACAC---UAGCGGACAGCGCCGCGGUCCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUUUCCCUAUUUACGCGAAGUAUACACACA ....((((...(((((((.---..((((......))))(....).......)))))))...)))).......((.((((((((...(((......)))..)))))))).))......... ( -30.90, z-score = -3.11, R) >droAna3.scaffold_13340 6856362 110 - 23697760 UACAGUUGUGUAAAUACAC---UAGCG------GCCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACACC ....((((...((((((((---(.(.(------((....)-))).))....)))))))...)))).......((.((((((((....((....)).....)))))))).))......... ( -27.30, z-score = -2.72, R) >droWil1.scaffold_181130 5760673 114 - 16660200 UACAGUUGUGCAAAUACAC---UAGCGGACAGCGUCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCGCAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAAAGUACACA-- ....((.((((........---..(((((..((((....)-)...(((((....)))))....))....))))).((((((((....((....)).....))))))))...)))))).-- ( -23.80, z-score = -0.31, R) >droMoj3.scaffold_6540 31775721 117 + 34148556 UACAGUUGUGCAAAUACACUUCUAGCGGACAGCAUCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCGUGCGCGUCGCGUAGUCAAGGACUUCCAAUAUUUACGCGAAAUACACACA-- ....((((...(((((((.((((.(.((...((...))..-))).))))..)))))))...))))...(((....((((((((....((....)).....))))))))....)))...-- ( -30.60, z-score = -1.63, R) >droGri2.scaffold_14906 753297 117 + 14172833 UACAGUUGUGCAAAUACACUUCUAGCGGGCAGCAUCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCGUGCGCGUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAAGACACACA-- ....((((...(((((((.((((...((((.((...)).)-))).))))..)))))))...))))...((((...((((((((....((....)).....))))))))..).)))...-- ( -35.30, z-score = -2.44, R) >droVir3.scaffold_13047 19169430 117 + 19223366 UACAGUUGUGCAAAUACACUUCUAGCGGACAGCAUCGCGG-CCCAAGAAUUUGUAUUUUAUCAGCAUCGUGCGCGUCGCGUAGUCAAGGACUUCCAAUAUUUACGCGAAAUACACACG-- ....((((...(((((((.((((.(.((...((...))..-))).))))..)))))))...))))..((((.(..((((((((....((....)).....))))))))....).))))-- ( -30.80, z-score = -1.60, R) >consensus UACAGUUGUGUAAAUACAC___UAGCGGACAACGCCGCGG_CCCAAGAAUUUGUAUUUUAUCAGCAUCAUUCACAUCGCGUAGUCAAGGACUCCCAAUAUUUACGCGAAGUAUACACA__ ....((((...(((((((......((((......))))(....).......)))))))...))))..........((((((((....((....)).....))))))))............ (-26.40 = -26.15 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:43 2011