| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,988,685 – 20,988,777 |
| Length | 92 |
| Max. P | 0.719360 |
| Location | 20,988,685 – 20,988,777 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 66.79 |
| Shannon entropy | 0.52646 |
| G+C content | 0.27543 |
| Mean single sequence MFE | -14.85 |
| Consensus MFE | -6.65 |
| Energy contribution | -8.65 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20988685 92 - 27905053 UAAUUGAUAGCGAAAGCAAUCUAAUUGUGAUUGCACUGACCUAGUUAAUUCUAUAAUAGGAGUAGAUAAAA-UAUAUCAAGUUACUUUUCUUG ...((((((((....)).(((((...(((....)))...((((.(((......)))))))..)))))....-..))))))............. ( -16.50, z-score = -1.05, R) >droSim1.chr3R 20813444 79 - 27517382 UAAUUGAUAGCGAAAGCAAUCUAAUUUUGAUAGCAAUGACCUAGUUAUUUCUAUAAAAGGAGUAGAUAAAAGUAUAUC--G------------ .....((((((....)).(((((.((((.((((.((((((...)))))).))))...)))).))))).......))))--.------------ ( -17.80, z-score = -3.21, R) >droSec1.super_33 249240 90 - 478481 UAAUAAAUAGCGAAAGCAAUCUAAUUUUGAUAGCAAUGACCUAGUUAUUUCUAUAAAAGGAGCAGAUAAAAGUAUAUC--GUUACCUUUAUA- .........((....))............((((.((((((...)))))).)))).((((((((.((((......))))--))).)))))...- ( -17.40, z-score = -2.16, R) >droEre2.scaffold_4820 3410342 73 + 10470090 ----AAAUGGCU--AGCAAAUUUCUUUUGAUUGCAGUGACCUAGUUAUUUCCUUUACUUUACU--UUAGAUUUACUUUUUA------------ ----((((((((--((...(((.(........).)))...)))))))))).............--................------------ ( -7.70, z-score = 0.02, R) >consensus UAAUAAAUAGCGAAAGCAAUCUAAUUUUGAUAGCAAUGACCUAGUUAUUUCUAUAAAAGGAGUAGAUAAAAGUAUAUC__G____________ .........((....)).(((((.((((.((((.((((((...)))))).)))).))))...))))).......................... ( -6.65 = -8.65 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:42 2011