| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,591,587 – 8,591,653 |
| Length | 66 |
| Max. P | 0.718077 |
| Location | 8,591,587 – 8,591,653 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 85.89 |
| Shannon entropy | 0.26039 |
| G+C content | 0.31590 |
| Mean single sequence MFE | -9.20 |
| Consensus MFE | -6.82 |
| Energy contribution | -6.94 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.718077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8591587 66 - 23011544 UAGCACUUGAACCGAAAGGAGUAUAAUAAUGAGGAGAAUAAGAAUAUUCAACGAAAAUGCAUUUUU ..(((......((....)).............(..(((((....)))))..).....)))...... ( -10.20, z-score = -2.47, R) >droEre2.scaffold_4929 9188636 65 - 26641161 UAGCACUUGAACCGAAAGGAGUA-AAUAAUGAGGAGAGUAAGAAUAUUCAACGAAAAUGCAAUUUU ..(((......((....))....-........(..(((((....)))))..).....)))...... ( -10.20, z-score = -2.38, R) >droYak2.chr2L 11240368 53 - 22324452 UAGCACUUGAACCGAAAG---------AAUGAA---AAUAAGAAUAUUCAACGAAAAUGCAGUUU- ..(((.......(....)---------..((((---.((....)).)))).......))).....- ( -4.40, z-score = -0.76, R) >droSec1.super_3 4078370 66 - 7220098 UAGCACUUGAACCGAAAGGAGUAUUAUAAUGAGAAGGAUAAGAAUAUUCAACGGAAAUGCUGUUUU (((((......((....))................(((((....)))))........))))).... ( -10.70, z-score = -1.66, R) >droSim1.chr2L 8380804 66 - 22036055 UAGCUCUUGAACCGAAAGGAGUAUAAUAAUGAGCAGAAUAAGAAUAUUCAACGAAAAUGCAGUUUU ..((((.((..((....))..)).......)))).(((((....)))))................. ( -10.50, z-score = -1.61, R) >consensus UAGCACUUGAACCGAAAGGAGUAUAAUAAUGAGGAGAAUAAGAAUAUUCAACGAAAAUGCAGUUUU ..(((.(((..((....))................(((((....)))))..)))...)))...... ( -6.82 = -6.94 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:26 2011