| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,974,967 – 20,975,057 |
| Length | 90 |
| Max. P | 0.558967 |
| Location | 20,974,967 – 20,975,057 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 60.00 |
| Shannon entropy | 0.73282 |
| G+C content | 0.43780 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -6.40 |
| Energy contribution | -6.40 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20974967 90 - 27905053 UGAAGAUGGUCCAUAAGGGCGCCCAAAGGUAAGUCAAUUGUGCGGGAGAUGCCCAAAAGGGCGUCAAGUGUGCACAUCCUUUUGUACAAA ....(((.((((....))))(((....)))..)))..(((((((((((((((((....)))))))..((....)).))))...)))))). ( -30.30, z-score = -2.28, R) >droSim1.chr3R 20803816 80 - 27517382 GGAAGAUGGCCAAUAAAGGCGCCCAAAGGUAAGUCACUUGUGCGGGGGAU----------GCGUCAAUUAUGCAUAUCCUUUAGUACAAA ....(((.(((......)))(((....)))..)))..((((((.((((((----------((((.....)))))).))))...)))))). ( -22.80, z-score = -1.21, R) >droYak2.chr3R 3310684 88 + 28832112 GGAAGAUGGUCAAUAAAGGCGCCCAAAGGCAAGUCACUUAUGCAGGAUGC--CCAAAAGGGCGUCAAUUAUGCAUGUCCAUUCCAACAAU (((..((((.(......((((((....)))..)))....(((((.(((((--((....))))))).....)))))).)))))))...... ( -30.80, z-score = -3.55, R) >droEre2.scaffold_4820 3396297 73 + 10470090 GGAAGAUGGUCAACAAGGGCGCCCAAAGGUAAGUCA-----------------CAAAAGAGCGUCAAUUGUGCAUAUACUUCUCUAGAAU ((((((((....((((.(((((.(....((.....)-----------------)....).)))))..))))...))).)))))....... ( -13.80, z-score = -0.29, R) >droAna3.scaffold_13340 6836217 78 - 23697760 --ACAAGAGUCC----CGACACUUGGAGGUCCUUCAAAAUUGAGAGGUUU---UUAAAGAGCG---AUAUUAAGUAUUCUUUAAAAUAUA --.((((.((..----..)).)))).....((((((....))).))).((---(((((((((.---.......))..))))))))).... ( -12.60, z-score = -0.05, R) >consensus GGAAGAUGGUCAAUAAAGGCGCCCAAAGGUAAGUCAAUUGUGCGGGAGAU___CAAAAGAGCGUCAAUUAUGCAUAUCCUUUACUACAAA ....(((((((......)))(((....)))...............................))))......................... ( -6.40 = -6.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:40 2011