| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,970,832 – 20,970,940 |
| Length | 108 |
| Max. P | 0.712988 |
| Location | 20,970,832 – 20,970,940 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.43640 |
| G+C content | 0.41861 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -14.63 |
| Energy contribution | -16.30 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20970832 108 + 27905053 --------UCCCAAGAAUCACGAUUAGUACAAUAUUUUGAUUGCUACCUGAAGGAUGUUGUGAAAGCAUCCUUGGAAGUGCCACUGCAUUCAGCAUAGCAACUUAUCGCAACCACG --------............((((.(((.(((....)))..(((((.((((((((((((.....)))))))))...(((((....))))))))..)))))))).))))........ ( -26.50, z-score = -1.89, R) >droAna3.scaffold_13340 6832418 99 + 23697760 -UCUAGCUUAAUUGUCAUUAUGAUAAAUACAAUAUUUUGAUUGCUACCUGAAGAUUGUUGUGAAAGUAUCCGUGG-AGUGGACUUCCCUCGUCAACCACGA--------------- -....((((..(((((.....))))).(((((((.(((.............))).))))))).))))...(((((-....(((.......)))..))))).--------------- ( -18.52, z-score = -0.44, R) >droEre2.scaffold_4820 3392339 116 - 10470090 UCCCGUUUGCCUAAGAAUCACGAUUAGUACAAUAUUUUGAUUGCUACCUGAAGGAUGUUGUGAAAGCAUCCUUGGCAAUGCCACUGCAUUUACCACAGCAACUUAUCGCAACCACG ...(((((((.(((((((((.(((.........))).)))))(((.....(((((((((.....)))))))))((.(((((....)))))..))..)))..))))..))))..))) ( -27.20, z-score = -2.02, R) >droYak2.chr3R 3306541 116 - 28832112 UGCCGUUUGCCAGAGAAUAACGAUUAGCACAAUAUUUUGAUUGCUACCUGAAGGAUGUCGUGAAAGCAUCCUUGGCAGUGCCACUGCAUUUACCACAGCAACUUAUCGCAACCACG ...(((((((..(((.........((((((((....)))..))))).(((((((((((.......)))))))).((((.....))))........)))...)))...))))..))) ( -26.00, z-score = -0.51, R) >droSec1.super_33 230974 108 + 478481 --------UCCUAAAUAUCACGAUUAGUACAAUAUUUUGAUUGCUACCUGAAGGAUGUUGUGAAAGCAUCCUUGAAAGUGCCAUUGCAUUCAGCACAGCAACUUAUCGCAACCACG --------............((((.(((.(((....)))..((((..((((((((((((.....)))))))))...(((((....))))))))...))))))).))))........ ( -25.20, z-score = -2.17, R) >droSim1.chr3R 20799785 108 + 27517382 --------UCCCAAGAAUCACGAUUAGUACAAUAUUUUGAUUGCUACCUGAAGGAUGUUGUGAAAGCAUCCUUGGAAGUGCCACUGCAUUCAGUAGAGCAACUUAUCGCAACCACG --------............((((.(((.(((....)))..((((..((((((((((((.....)))))))))...(((((....))))))))...))))))).))))........ ( -26.30, z-score = -1.72, R) >consensus ________UCCUAAGAAUCACGAUUAGUACAAUAUUUUGAUUGCUACCUGAAGGAUGUUGUGAAAGCAUCCUUGGAAGUGCCACUGCAUUCACCACAGCAACUUAUCGCAACCACG ....................((((.(((.(((....)))..((((...(.(((((((((.....))))))))).).(((((....)))))......))))))).))))........ (-14.63 = -16.30 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:39 2011