| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,966,634 – 20,966,724 |
| Length | 90 |
| Max. P | 0.512453 |
| Location | 20,966,634 – 20,966,724 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 85.20 |
| Shannon entropy | 0.24073 |
| G+C content | 0.58132 |
| Mean single sequence MFE | -33.16 |
| Consensus MFE | -29.30 |
| Energy contribution | -28.82 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20966634 90 - 27905053 ---------------------CGAGUUGCGGGCUGCGAGUUGCGAAAUGCGAAAUGCGGAGCGAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC ---------------------....((((...(((((..((((.....))))..))))).))))..((((...((..(((.(((((....)))))))).))...))))... ( -28.90, z-score = -0.84, R) >droSim1.chr3R 20797044 90 - 27517382 ---------------------CGAGUUGCGGGCUGCGAGUUGCGAAAUGCGAAAUGCGGAGCAAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC ---------------------....((((...(((((..((((.....))))..))))).))))..((((...((..(((.(((((....)))))))).))...))))... ( -29.20, z-score = -1.14, R) >droSec1.super_33 228275 90 - 478481 ---------------------CGAGUUGCGGGCUGCGAGUUGCGAAAUGCGAAAUGCGGAGCAAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC ---------------------....((((...(((((..((((.....))))..))))).))))..((((...((..(((.(((((....)))))))).))...))))... ( -29.20, z-score = -1.14, R) >droYak2.chr3R 3303215 111 + 28832112 CGAGUUGCGGGCUGCGAAUUGCGAGUUGCGAGUUGCAAGUUGCGAAAUGCGAAAUGCGGAGCAAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC ....((((...(((((..(((((..((((((.(....).))))))..)))))..))))).))))..((((...((..(((.(((((....)))))))).))...))))... ( -36.20, z-score = -0.53, R) >droEre2.scaffold_4820 3387467 111 + 10470090 CGAGUUGCGAGUUGCGGGCUGCGAGUUGCGGGCUGCGAGUUGCGAGUUGCGAAAUGCGGAGCAAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC ....((((((.((((((.((((.....)))).)))))).))))))(((.((.....)).)))....((((...((..(((.(((((....)))))))).))...))))... ( -42.30, z-score = -1.35, R) >consensus _____________________CGAGUUGCGGGCUGCGAGUUGCGAAAUGCGAAAUGCGGAGCAAAACAUGCAUACAGAUCACGGCUGGCAGGCCGGAUGGUCGACAUGGAC .........................((((...(((((..((((.....))))..))))).))))..((((...((..(((.(((((....)))))))).))...))))... (-29.30 = -28.82 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:38 2011