| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,947,770 – 20,947,881 |
| Length | 111 |
| Max. P | 0.587534 |
| Location | 20,947,770 – 20,947,881 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.21 |
| Shannon entropy | 0.37924 |
| G+C content | 0.42305 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -20.83 |
| Energy contribution | -22.20 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20947770 111 - 27905053 AAAUCGACAAUAUUAUCAUAUUC-GGUCAGGCAAUGCGGCUCCUAUUGCUUUUAUGCAUAUGUCGACUUUUGGUUUUUA-UCCGAG-UUUUCCAGGGGUGGUU-CUACCCCUUCU ...((((((....(((((((...-....((((((((.(....))))))))).)))).)))))))))..(((((......-.)))))-......(((((((...-.)))))))... ( -26.60, z-score = -1.17, R) >droSim1.chr3R 20778120 112 - 27517382 AAAUCGACAAUAUUAUCAUAUUC-GGUGAGGCAAUGGGGCUCCUAUUGCUUUUAUGCAUAUGUCGACUUUUGGUUUCUA-UCCGAGUUUUUCCGGGGGUGGUU-CUACCCCUACU ...((((((...(((((......-)))))(((((((((...)))))))))..........))))))..(((((......-.))))).......(((((((...-.)))))))... ( -33.60, z-score = -2.12, R) >droSec1.super_33 209326 112 - 478481 AAAUCGACAAUAUUAUCAUAUUC-GGUCAGGCAAUGGGGCUCCUAUUGUUUUUAUGCAUAUGUCGACUUUUGGUUUCUA-UCCGAGUUUUUCUGGGGGUGGUU-CUACCCCUACU ...((((((....(((((((...-....((((((((((...)))))))))).)))).)))))))))..(((((......-.)))))......((((((((...-.)))))))).. ( -29.40, z-score = -1.46, R) >droYak2.chr3R 3284107 114 + 28832112 AAAUCGACAAUAUUAUCAUAUUC-GGUCAGGCAAUGGGGCUCCAAAUGCUUUUAUGCAUAUGUCGACUCUUGGUUUCUAUUCCGAGUUUUUCCAGGGGUGGUUCCUACCCCUUCU ...((((((..............-((...(((......)))))..((((......)))).))))))..(((((........))))).......((((((((...))))))))... ( -30.80, z-score = -1.66, R) >droEre2.scaffold_4820 3368368 113 + 10470090 AAAUCGACCAUAUUAUCAUAUUC-GGUCAGGCAAUGGGGCUCCAAUUGCUUUUAUGCAUAUGUCGAUUCUUGGUUUCUA-UCCGAGUUUUUCCGGGGGUGGUUCCUACCCCUUCU .(((((((.((((...((((...-....(((((((((....)).))))))).)))).)))))))))))(((((......-.))))).......((((((((...))))))))... ( -31.50, z-score = -1.29, R) >droAna3.scaffold_13340 6811599 114 - 23697760 AAGAGAAAUAUCUUCUUAAAUUCAGGUCAUAUAUGGGGGUUUCCUUCGCCUAUGCAUUUGGGUGGUGAGCCAGUUACUUCUAGUCGAGUUUUUAGGGGUUGUU-CUACCCUUACU ..(((((.....)))))((((((.((((((....((((....))))((((((......)))))))))).))((......))....)))))).(((((((....-..))))))).. ( -26.80, z-score = 0.36, R) >consensus AAAUCGACAAUAUUAUCAUAUUC_GGUCAGGCAAUGGGGCUCCUAUUGCUUUUAUGCAUAUGUCGACUUUUGGUUUCUA_UCCGAGUUUUUCCAGGGGUGGUU_CUACCCCUACU ...((((((((((....)))).......((((((((((...)))))))))).........))))))..(((((........))))).......((((((((...))))))))... (-20.83 = -22.20 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:37 2011