| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,938,353 – 20,938,456 |
| Length | 103 |
| Max. P | 0.630199 |
| Location | 20,938,353 – 20,938,456 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.30654 |
| G+C content | 0.42884 |
| Mean single sequence MFE | -28.34 |
| Consensus MFE | -19.00 |
| Energy contribution | -20.36 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20938353 103 + 27905053 AGCACUUUUUGGUGGGGAAAGAAGUACCCCCACUAAUGCGCUAGCGUUCCUUACUAAGCUAUGCAAAAAUAAAGUACUCCAAAGCAUUUUCGUUCGCCAUAGC (((.(...(((((((((..........))))))))).).)))...............(((((((.((...(((((.((....)).)))))..)).).)))))) ( -23.70, z-score = -0.55, R) >droSim1.chr3R 20768575 103 + 27517382 AGCACUUUUUGGUGGGGGAAGAAGUGCCCCCAUUAAAACGUUAGUGUUCCUUACUAACCUAUGCCAAAAAAAAGUGCUCCAAGGCAUUUUUGUUCGCCAUAGU ......((((((((((((........)))))))))))).(((((((.....)))))))(((((.(.((.(((((((((....))))))))).)).).))))). ( -35.20, z-score = -3.50, R) >droSec1.super_33 199641 101 + 478481 AGCACUUUU-GGUGGGGGAAGAAGUACCCCCAUUAAUACGUUAGUCUUCCUUACUAACCUAUGCCAAAAAAA-GUGCUUCAAGGCAUUUUCGUUCGCCAUAGU (((((((((-((((((((........)))))))).(((.((((((.......)))))).)))......))))-)))))....(((..........)))..... ( -31.40, z-score = -3.23, R) >droYak2.chr3R 3274418 103 - 28832112 AGCACUUUUCGGUGGGGGAGCAAGUACCCCGACUAUUAUGUUAGUGUUUGUUACUAAGCGAUGCCCAAACAAAGUGCUCCAAAUAAGUUUUAUGCGCCAUAUU ((((((((..(((.((((........)))).)))......((((((.....)))))).............))))))))......................... ( -23.30, z-score = 0.14, R) >droEre2.scaffold_4820 3358628 103 - 10470090 AGCACUUUCUGGUGGGGGAAGAAGUGCCCCGACUAAUAUGUUAGUGUUUGUUACUAAGCGACGCCCAAAUAAAGUGCUCCAUAUUAGUUUUAUUCGCCAUAGU ...(((...(((((((((........))))((((((((((((((((.....))))))((.((...........))))..)))))))))).....))))).))) ( -28.10, z-score = -1.48, R) >consensus AGCACUUUUUGGUGGGGGAAGAAGUACCCCCACUAAUACGUUAGUGUUCCUUACUAAGCUAUGCCAAAAAAAAGUGCUCCAAAGCAUUUUUGUUCGCCAUAGU ((((((((..((((((((........))))))))......((((((.....)))))).............))))))))......................... (-19.00 = -20.36 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:36 2011