| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,932,406 – 20,932,508 |
| Length | 102 |
| Max. P | 0.616858 |
| Location | 20,932,406 – 20,932,508 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 69.75 |
| Shannon entropy | 0.57425 |
| G+C content | 0.41238 |
| Mean single sequence MFE | -22.09 |
| Consensus MFE | -9.15 |
| Energy contribution | -9.82 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20932406 102 + 27905053 GUGCUUCAAGUUCAACGCUUUCAAUGAGUUAAGAUCGGUAUCAUACUUUGGAUCCAAAUCAGAAUCUUCAUCGUUUUCCAUAUGAC---GAUCUUCAAGCGCGGA ((((((..........((((.....)))).(((((((...(((((...((((........................))))))))))---)))))).))))))... ( -19.86, z-score = -0.08, R) >droSim1.chr3R 20762651 93 + 27517382 GUGCUUCAAGUUCAACG---------AGUUAAGAUCGGUCUCAUACUUUGGAUCCAAAUCAGAAUCUUCAUCGUUUUCCAUGUGAC---UAUCUUGAAGCACGGA ((((((((((.....((---------(.......)))(((.(((..((((....))))...((....))..........))).)))---...))))))))))... ( -23.40, z-score = -1.58, R) >droSec1.super_33 193705 102 + 478481 GUGCUUCAAGUUCAACGUCUUCAACGAGUUAAGAUCGGUCUCAUACUUGGGAUCCAAAUCAGAAUCUUCAUCGUUUUCCAUGUCAC---GAUCUUGAAGCACGGA ((((((((((.((.((((....(((((...(((((((((((((....))))))).......).)))))..)))))....))))...---)).))))))))))... ( -31.51, z-score = -3.43, R) >droYak2.chr3R 3268469 102 - 28832112 GUGCUUCAAGUUCAGCGCUUUCAACGAUUCAAGAUCGGUAUCAUACUUUGAAUCCAAACGCGUAUCUUCAUCAUUUUCCCUAUGAC---GAUCUUGAAGCCCACC (.((((((((.((.((((.......(((((((....((((...))))))))))).....)))).......((((.......)))).---)).)))))))).)... ( -24.40, z-score = -3.19, R) >droEre2.scaffold_4820 3352212 102 - 10470090 GUGCUUUAGUUUCAGCACUUUCAACGAGUCAAGAUCGGCAUCAUACUUUGGAUCCAAUCGCGAGUCCUCACCAUUUUCCAUAUGAC---GAUCCUGAAGCCCAUC (((((........))))).......(..(((.(((((...(((((...((((...(((.(.((....)).).))).))))))))))---)))).)))..)..... ( -21.50, z-score = -1.16, R) >droAna3.scaffold_13340 6795066 97 + 23697760 GUUUUUCAAAUUAUACAUUUUUAAC------GCGUCAUUAACUUGCUUUUGAGCCAAUUGCUCGGUAUGUACCUCUUCUAUAUUAUCUGGAUUCAAAAGGGCA-- .........................------............(((((((((((.....))))(((....))).......................)))))))-- ( -11.90, z-score = 0.65, R) >consensus GUGCUUCAAGUUCAACGCUUUCAACGAGUUAAGAUCGGUAUCAUACUUUGGAUCCAAAUCAGAAUCUUCAUCGUUUUCCAUAUGAC___GAUCUUGAAGCACAGA ((((((((((.((...................((((..............)))).......(......)....................)).))))))))))... ( -9.15 = -9.82 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:35 2011