| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,930,236 – 20,930,352 |
| Length | 116 |
| Max. P | 0.962535 |
| Location | 20,930,236 – 20,930,352 |
|---|---|
| Length | 116 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 68.35 |
| Shannon entropy | 0.63618 |
| G+C content | 0.44174 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -12.32 |
| Energy contribution | -10.73 |
| Covariance contribution | -1.59 |
| Combinations/Pair | 1.77 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20930236 116 - 27905053 UCAUCAUAUAUCCCUUUGCCUGUUGGUUCAAAUGCUUCCGACCAAAGGCGAAGGACCUCAUAGAUGCUAGUUCCGAUUGGGAUUGCAUUUCCCAGGACGAUGAAACACCCGAAUGC--- (((((.......(((((((((.((((((...........))))))))))))))).(((...((((((.((((((....))))))))))))...)))..))))).............--- ( -39.30, z-score = -3.59, R) >droWil1.scaffold_181130 5682684 98 - 16660200 UCGUUAUUUUUCCUUUUCUAUUUUGGUGUAAAUGUUUUUUACCCAGAAAAGAGGAUCUUAUGAUCGCUAGUACCGAAUGGUAUUGCAAUCCU--GAAUGC------------------- ..........(((((((...((((((.(((((.....))))))))))))))))))..(((.(((.((.((((((....)))))))).))).)--))....------------------- ( -25.20, z-score = -3.22, R) >droPer1.super_3 7023482 119 + 7375914 UUAUAUGUAUACCAUUUGUAUUUUGGUGCAAGUGCUUUAGACCAAAGGUUGAAGAUUUGAUGGCAGCUAGUACCGAAUGGUUUUGUAGUCCUCAAGAUACCGAUGAGAACUCGAAAGGA ...........((........((((((((.((((((...((((...))))...........)))).)).))))))))...(((((.(((.((((.(....)..)))).)))))))))). ( -25.24, z-score = -0.18, R) >droAna3.scaffold_13340 6792263 104 - 23697760 UUAUUAUAUUUCUAUUUGCAUUUUGGUGCAAAUGUUUUCGACCGAAGCCUGAAGAUCUUCUGGCUGCCAGCACUGAAUGGAUUUGUAGACC---GGAUAGCGAUUGU------------ ............(((((((((....)))))))))...(((.(((.((((.(((....))).)))).(((........)))..........)---))....)))....------------ ( -23.50, z-score = -0.29, R) >droEre2.scaffold_4820 3350036 116 + 10470090 UCAUCAUAUAUCCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAGGGACCUCAUAGAAGCCAGUUCCGAUUGGGAUUGCAUUUCUCAAAACGAUGAAACACAAAAAUGC--- (((((.....((((((.(((((((((.((....))..)))))...))))))))))......(((((.(((((((....)))))))..)))))......))))).............--- ( -36.20, z-score = -2.66, R) >droYak2.chr3R 3266291 116 + 28832112 UCAUCAUAUAUCCCUUUGCCUGUUGGUGUAAGUGCUUCCGACCAAAGGCGACGGACCUCAUAGAAGCUAGCUCCGAUUGGGACUGCAUUUCUCAAAACAGCGAAACACCCGAAUGC--- ..........((((.(((((((((((.((....))..)))))...))))))((((.((..........)).))))...))))..((((((....................))))))--- ( -24.15, z-score = 0.79, R) >droSec1.super_33 191538 116 - 478481 UCAUCAUAUAUCCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGAUCUCAUAGAUGCCAGUUCCGAUUGGGAUUGCGUUUCCCAGAACGAUGAAACCCCCGAAUGC--- (((((.......((((((((((((((.((....))..)))))...))))))))).(((...((((((.((((((....))))))))))))...)))..))))).............--- ( -39.50, z-score = -3.42, R) >droSim1.chr3R 20760487 116 - 27517382 UCAUCAUAUAUCCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGAUCUCAUAGAUGCUAGUUCCGAUUGGGAUUGCAUUUCCCAGAACGAUGAAACUCCCGAAUGC--- (((((.......((((((((((((((.((....))..)))))...))))))))).(((...((((((.((((((....))))))))))))...)))..))))).............--- ( -39.90, z-score = -3.59, R) >consensus UCAUCAUAUAUCCCUUUGCCUGUUGGUGCAAGUGCUUCCGACCAAAGGCGAAGGAUCUCAUAGAUGCUAGUUCCGAUUGGGAUUGCAUUUCUCAGAACGAUGAAACACCCGAAUGC___ ............(((((((...(((((.............)))))..))))))).......(((.((.((.(((....))).)))).)))............................. (-12.32 = -10.73 + -1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:34 2011