| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,919,958 – 20,920,050 |
| Length | 92 |
| Max. P | 0.976013 |
| Location | 20,919,958 – 20,920,050 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 67.73 |
| Shannon entropy | 0.58519 |
| G+C content | 0.33712 |
| Mean single sequence MFE | -20.91 |
| Consensus MFE | -8.36 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.976013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20919958 92 - 27905053 ---UUAUGAGCACCA--------GCGUAUUUGCAUUAUCUUGUACGUUUGCCAGCUUUA-GUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCUUUCCGUUUUA-------- ---....(((((((.--------(((....))).((((.(((((((..((.((((....-))))....))..))))))))))).....))))))).........-------- ( -24.30, z-score = -3.36, R) >droAna3.scaffold_13340 6781843 94 - 23697760 ---UUAUGAACACAAAUAUAUGUACAUAUUUGCCUUAUGAUAUAUGUUUAUCAGCUUAAUGUUCAACAUAAC---AUGAAAAAAUUAAGAGGUGCUCUCU------------ ---....((.(((((((((((((.((((.......)))))))))))))).....((((((.((((.......---.))))...))))))..))).))...------------ ( -18.60, z-score = -2.03, R) >droEre2.scaffold_4820 3339613 91 + 10470090 ---UUAUGAGCACCA--------GCGUAUUUGCAUUAUGUUGUACGUUUACCAGCUUUA-GUUGAAUAUAUCCGUACAAAUAAAUUAAAGUGCUUUCCUUUUG--------- ---....((((((..--------(((....))).((((.(((((((..((.((((....-))))....))..)))))))))))......))))))........--------- ( -20.40, z-score = -2.83, R) >droYak2.chr3R 3255715 92 + 28832112 ---UUAUGAGCACCA--------GCGUAUUUGCUUUAUGUUGUACGUUUACCAGCUUUA-GCUGAACAUAUCCGUACAAAUAAAUUGAGGUGCUUUCCGUUUUG-------- ---....(((((((.--------(((....)))(((((.(((((((..((.((((....-))))....))..))))))))))))....))))))).........-------- ( -27.00, z-score = -3.81, R) >droSec1.super_33 181056 92 - 478481 ---UUAUGAGCACCA--------GCGUAUUUGCUUUAUCAUGUACGUUUGCCAGCUUUA-GUUGAACAUAUCCCUACAAAUAAAUUAAGGUGCUUUCCGUUUUA-------- ---....((((((((--------((((((.((......)).)))))))...((((....-))))........................))))))).........-------- ( -20.00, z-score = -2.15, R) >droSim1.chr3R 20750055 92 - 27517382 ---UUAUGAGCACCA--------GCGUAUUUGCUUUAUCAUGUACGUUUGCCAGCUUUA-GUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCUUUCCGUUUUA-------- ---....((((((((--------(((....))))......((((((..((.((((....-))))....))..))))))..........))))))).........-------- ( -23.10, z-score = -2.91, R) >droWil1.scaffold_181024 947849 104 + 1751709 AUCUUAUUGACGAUGA------AUUGGCUCAAUUUUGAAAAAGGUAUUUGUGAACUUC--GAAGAAGAAAGCCGGCAAGAUAAAAAGAUACGUUUAAAGUAGACAUAAAAUA (((((.(((.(..((.------..(((((..(((((....))))).........((((--...))))..))))).)).).))).)))))..(((((...)))))........ ( -13.00, z-score = 0.82, R) >consensus ___UUAUGAGCACCA________GCGUAUUUGCUUUAUCAUGUACGUUUGCCAGCUUUA_GUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCUUUCCGUUUUA________ .......((((((..........((((((............))))))....((((.....)))).........................))))))................. ( -8.36 = -7.90 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:29 2011