| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,902,778 – 20,902,896 |
| Length | 118 |
| Max. P | 0.558348 |
| Location | 20,902,778 – 20,902,896 |
|---|---|
| Length | 118 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.37 |
| Shannon entropy | 0.13203 |
| G+C content | 0.36116 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.46 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20902778 118 + 27905053 CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC-GAUGCUAAUGAUGGAAC ....((((..............(((((.....))))).........-))))..............................(((((((((.((((.......-..))))))))))))).. ( -23.90, z-score = -1.37, R) >droWil1.scaffold_181130 10995402 120 - 16660200 CAAAUACUAAUCUGAUCUAAUGAGGUGCAAAACACCUGACAAUCCUUAACCAUGUAAUUAAAGGUGUUUAGUCUAAUUCGGCCUAUCAUUUAACAGCUGUCUUGAUGUUAAUGAUGGAAA ...........((((((....))((.((.((((((((.(((...........)))......)))))))).))))...)))).((((((((.((((.(......).))))))))))))... ( -21.30, z-score = -0.20, R) >droSim1.chr3R 20733097 118 + 27517382 CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC-GAUGCUAAUGAUGGAAC ....((((..............(((((.....))))).........-))))..............................(((((((((.((((.......-..))))))))))))).. ( -23.90, z-score = -1.37, R) >droSec1.super_33 164300 118 + 478481 CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC-GAUGCUAAUGAUGGAAC ....((((..............(((((.....))))).........-))))..............................(((((((((.((((.......-..))))))))))))).. ( -23.90, z-score = -1.37, R) >droYak2.chr3R 3237463 118 - 28832112 CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC-GAUGCUAAUGAUGGAAC ....((((..............(((((.....))))).........-))))..............................(((((((((.((((.......-..))))))))))))).. ( -23.90, z-score = -1.37, R) >droEre2.scaffold_4820 3320034 118 - 10470090 CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC-GAUGCUAAUGAUGGAAC ....((((..............(((((.....))))).........-))))..............................(((((((((.((((.......-..))))))))))))).. ( -23.90, z-score = -1.37, R) >droAna3.scaffold_13340 6766772 118 + 23697760 CAAAGGUUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC-AACCAUAUAAUUAAAUGUGUUUAUACUAAUUCUGUCUAUCAUUUAACAGCUGUCU-GAUGUUAAUGAUGGAAC ....(((.((((((........(((((.....))))).........-.....((....))..))))))...))).......(((((((((.((((.(.....-).))))))))))))).. ( -22.40, z-score = -1.03, R) >consensus CAAAGGCUAACACGAUCUAAUAAGGUGUAAAACACCUGACAACACC_AGCCAUAUAAUUAAAUGUGUUUAUACUAAUUCCGUCUAUCAUUUAGCAGCUGUCC_GAUGCUAAUGAUGGAAC ....((((..............(((((.....)))))..........))))..............................(((((((((.((((..........))))))))))))).. (-21.50 = -21.46 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:25 2011