| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,883,223 – 20,883,277 |
| Length | 54 |
| Max. P | 0.687711 |
| Location | 20,883,223 – 20,883,277 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 53.34 |
| Shannon entropy | 0.75355 |
| G+C content | 0.37719 |
| Mean single sequence MFE | -8.70 |
| Consensus MFE | -3.98 |
| Energy contribution | -2.58 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.86 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20883223 54 + 27905053 ----AAGCUUGCUCAU--AGUACGAGUAUCCCUAAUCGAAAUGAA-AUCCCCAUUAAGUGA------ ----..((((((((..--.....))))............((((..-.....))))))))..------ ( -5.00, z-score = -0.39, R) >droVir3.scaffold_12936 193248 52 - 632223 ----GAGCUUUCUUCUCUACUAAAAGAAUGCA-GACUGACAUUAA-AUCAUUUCUUGC--------- ----..((.(((((.........))))).)).-............-............--------- ( -4.30, z-score = 0.71, R) >droSim1.chr3R 20712866 54 + 27517382 ----AAGGUUGCUCAU--AGUACGAGUAUCCCUAAUUGAAAUGGA-AUCCCCAUUAAGUGA------ ----.(((.(((((..--.....)))))..)))......(((((.-....)))))......------ ( -10.80, z-score = -1.47, R) >droSec1.super_33 144780 54 + 478481 ----AAGGUUGCUCAU--AGUACGAGUAUCCCUAAUUGAAAUGGA-AUCCCCAUUAAGUGA------ ----.(((.(((((..--.....)))))..)))......(((((.-....)))))......------ ( -10.80, z-score = -1.47, R) >droAna3.scaffold_13340 6735823 67 + 23697760 GAGGGGGUUUUAAUGACAAACAUAUGAAUGUACCAUUUAUCUUAUCAUAGUGAGUCCCAGAACUCAC ((..((((...((((....((((....))))..)))).))))..))...((((((......)))))) ( -12.60, z-score = -0.17, R) >consensus ____AAGCUUGCUCAU__AGUACGAGUAUCCCUAAUUGAAAUGAA_AUCCCCAUUAAGUGA______ ......((.(((((.........))))).)).................................... ( -3.98 = -2.58 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:24 2011