| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,877,599 – 20,877,717 |
| Length | 118 |
| Max. P | 0.512780 |
| Location | 20,877,599 – 20,877,717 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.30 |
| Shannon entropy | 0.29936 |
| G+C content | 0.35926 |
| Mean single sequence MFE | -27.01 |
| Consensus MFE | -18.37 |
| Energy contribution | -19.32 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20877599 118 + 27905053 GGAAGAUAAAGGGGAAACAAAUUGUUUGCACUUCAGCAAUUGCCAUUUAAGUCAUUAGUAUGUAUGGCGGUUUGAACCUAUGUACAUACGGACAUUUGGCAAUAUAUUAUA--GGCUUUU ...((((((...(....)...))))))((.((......(((((((.....(((....(((((((((..(((....)))..))))))))).)))...))))))).......)--))).... ( -28.92, z-score = -1.98, R) >droAna3.scaffold_13340 6730540 105 + 23697760 GGAAGAUAAAGAGGAA-----------ACACUUCAACAAUUGCCGUUUAAAUCAUUAAUAUGUAUGGAAGUAUGAACU----UGCUUGCGGACAUACGGUUGUAUAUUAUAUUGACUAUA ((..((((..((((..-----------...)))).(((((((....((((....))))(((((.((.(((((......----))))).)).))))))))))))......))))..))... ( -16.70, z-score = 0.12, R) >droEre2.scaffold_4820 3294993 116 - 10470090 GGAAGAUAAAGGGGAAGCAAAUUGUUUGCACUUCAGCAAUUGCCAUUUAAGUCAUUAGUAUGUAUGGCAGUAUAUGCG--CCGACAUACGGACAUUUGGCCAUAUAUUAUA--GGCUUUA .............(((((.(((((((........)))))))((((.....(((....((((((.((((.((....)))--))))))))).)))...))))...........--.))))). ( -28.80, z-score = -1.06, R) >droYak2.chr3R 3212054 118 - 28832112 GGAAGAUAAAGGGGAAACAAAUUGUUUGCACUUCAGCAAUUGCCAUUUAAGUCAUUAGUAUGUACGGCGGUAUAAACAUACCGACAUACGGACAUUUGGCAAUUUAUUAUA--GGCUUUA ...((((((...(....)...))))))((.((.....((((((((.....(((....((((((....((((((....)))))))))))).)))...))))))))......)--))).... ( -30.10, z-score = -3.27, R) >droSec1.super_33 139370 118 + 478481 GGAAGAUAAAGGGGAAACAAAUUGUUUGCACUUCAGAAAUUGCCAUUUAAGUCAUUAGUAUGUAUGGCGGUAUGAACCUAUGUACAUGCGGACAUUUGGCAAUAUAUUAUA--GGCUUUU ...((((((...(....)...))))))((.((......(((((((.....(((....(((((((((..(((....)))..))))))))).)))...))))))).......)--))).... ( -29.12, z-score = -1.93, R) >droSim1.chr3R 20707346 117 + 27517382 GGAAGAUAAAGGGGAA-CAAAUUGUUUGCACUUCAGCAAUUGCCAUUUAAGUCAUUAGUAUGUAUGGCGGUAUGAACCCAUGUACAUACGGACAUUUGGCAAUAUAUUAUA--GGCUUUU .((((......(.(((-(.....)))).).))))....(((((((.....(((....(((((((((..(((....)))..))))))))).)))...)))))))........--....... ( -28.40, z-score = -1.43, R) >consensus GGAAGAUAAAGGGGAAACAAAUUGUUUGCACUUCAGCAAUUGCCAUUUAAGUCAUUAGUAUGUAUGGCGGUAUGAACCUAUGUACAUACGGACAUUUGGCAAUAUAUUAUA__GGCUUUA .((((...(((.(.((((.....)))).).))).....(((((((.....(((....(((((((....(((....)))....))))))).)))...)))))))............)))). (-18.37 = -19.32 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:23 2011