| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,836,747 – 20,836,861 |
| Length | 114 |
| Max. P | 0.615385 |
| Location | 20,836,747 – 20,836,861 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.01 |
| Shannon entropy | 0.29855 |
| G+C content | 0.45611 |
| Mean single sequence MFE | -29.01 |
| Consensus MFE | -21.57 |
| Energy contribution | -21.93 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20836747 114 - 27905053 CAGCAGGCAUAAGGCAGAAGGCCAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCGAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCG .....(((....(.(((..(((((.....)))))....(((((((....)))))))))).).......(((.......((....))...(((((....)))))....)))))). ( -33.00, z-score = -1.78, R) >droSim1.chr3R 20668327 114 - 27517382 CAGCAGGCAGAAGGCAGAAGGCCAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCGAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCG .....(((....(.(((..(((((.....)))))....(((((((....)))))))))).).......(((.......((....))...(((((....)))))....)))))). ( -33.00, z-score = -1.69, R) >droSec1.super_33 98243 107 - 478481 -------CAGCAGGCAGAAGGCCAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCAAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCG -------.....(.(((..(((((.....)))))....(((((((....)))))))))).)......................((((..(((((....))))).......)))) ( -30.90, z-score = -1.80, R) >droYak2.chr3R 3170536 114 + 28832112 CGGAAGGCAGCAGGCAGAAGGCCAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCGAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCG .(((.(.((((........(((((.....))))).....((((((....)))))))))).)....((....))....)))...((((..(((((....))))).......)))) ( -33.80, z-score = -1.71, R) >droEre2.scaffold_4820 3253516 114 + 10470090 UAGAAGGCAGUAGGCAGUUGGCGAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCGAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGACUUUGGCCG .....(((...((((.(((((.((.......(((....(((((((....)))))))..)))....((....))....))))))).))..(((((....)))))..))...))). ( -31.00, z-score = -0.98, R) >dp4.chr2 19895671 86 + 30794189 ----------------------------CUGGCCCAUACAAUUUGGCAACAAAUUGCAGGCGAAACAACAAUGAAAAUUCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCC ----------------------------...(((....(((((((....)))))))..))).......................(((..(((((....))))).......))). ( -20.70, z-score = -1.05, R) >droPer1.super_0 9569172 86 - 11822988 ----------------------------CUGGCCCAUACAAUUUGGCAACAAAUUGCAGGCGAAACAACAAUAAAAAUUCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCC ----------------------------...(((....(((((((....)))))))..))).......................(((..(((((....))))).......))). ( -20.70, z-score = -1.36, R) >consensus __G_AGGCAG_AGGCAGAAGGCCAAGAACUGGCCCAUACAAUUUGGCAACAAAUUGCUGGCGAAACAACAAUGAAAAUCCUAACGGCAAGUGCUCAUAAGCAUGAAUUUGGCCG ............(((.....)))........(((....(((((((....)))))))..))).......................(((..(((((....))))).......))). (-21.57 = -21.93 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:12 2011