| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,818,774 – 20,818,837 |
| Length | 63 |
| Max. P | 0.991600 |
| Location | 20,818,774 – 20,818,837 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 85.71 |
| Shannon entropy | 0.23284 |
| G+C content | 0.39165 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -13.71 |
| Energy contribution | -15.15 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20818774 63 - 27905053 UACUUAUUUUUUCUCAAAUUUUCCAGAGGGGGUGCGAUGAAGUGCACCCCGAAAUGUGGGAAA .........(((((((...((((.....((((((((......))))))))))))..))))))) ( -21.80, z-score = -2.81, R) >droSim1.chr3R 20650371 63 - 27517382 UACUUAUUUUUUCUCAAAUUUUCCAGAGGGUGUGCUAUAAAGUGCACCCCGAAAUGUGGAAAA ..................(((((((.((((((..((....))..))))).....).))))))) ( -19.00, z-score = -3.58, R) >droSec1.super_33 80153 63 - 478481 UACUUAUUUUUUCUCAAAUUUUCCAUAGGGUGUGCGAUAAAGUGCACCCCGAAAUGUGAAAAA .......((((((.((...((((....(((((..(......)..))))).)))))).)))))) ( -17.40, z-score = -3.77, R) >droYak2.chr3R 3152027 59 + 28832112 UGCCUAUUUCUUGUCAUAUUUUCCUGGGGGU----UAUAAAGUGCACCCCGAAAUGUGGCAAA ..........((((((((((((...((((((----........)).)))))))))))))))). ( -19.50, z-score = -2.71, R) >consensus UACUUAUUUUUUCUCAAAUUUUCCAGAGGGUGUGCGAUAAAGUGCACCCCGAAAUGUGGAAAA ..........((((((...((((....((((((((......)))))))).))))..)))))). (-13.71 = -15.15 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:06 2011