| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,814,779 – 20,814,876 |
| Length | 97 |
| Max. P | 0.782484 |
| Location | 20,814,779 – 20,814,876 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.42728 |
| G+C content | 0.53327 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20814779 97 - 27905053 -----ACCGGCUCUUUUCUGUUUCUGGCCACGGUUGUGGUCCAUCGCCACU-UGCCUAACGGCGAAAUGGAAGCCUUAACAAUGGGACAUUAGCCUGGGCCAG -----...(((((.(((((((((((((((((....)))).)))........-.(((....)))))))))))))(((.......)))..........))))).. ( -33.40, z-score = -1.32, R) >droSim1.chr3R 20646451 97 - 27517382 -----AUCGGCUCUUUUCUGGUUCUGGCCAUGGUUGUGGUCCAUCGCCACU-UGCCUAACGGCGAAAUGGAAGCCUUAACAAUGGGACAUUAGCCUGGGCCAG -----(((((.......))))).((((((..(((((((((.....)))))(-((((....)))))((((....(((.......))).))))))))..)))))) ( -32.60, z-score = -0.83, R) >droSec1.super_33 76212 97 - 478481 -----ACCGGUUCUUUUCUGGUUCUGGCCAUGGUUGUGGUCCAUCGCCACU-UGCCAAACGGCGAAAUGGAAGCCUUAACAAUGGGACAUUAGCCUGGGCCAG -----(((((.......))))).((((((.((((.(((((.....))))).-.))))...(((..((((....(((.......))).)))).)))..)))))) ( -36.40, z-score = -1.86, R) >droYak2.chr3R 3148041 93 + 28832112 ---------UCUGGUUCUCGGUUCUGACCAUGGUUGUGGUCCAUCUCCACU-UGCCUAACGGCAAAAUGGGAGCCCUAACAAUGGGACAUUAGCCUGGGCCAG ---------.(((((((..((((..((((((....))))))...((((..(-((((....)))))....))))(((.......))).....)))).))))))) ( -36.10, z-score = -2.31, R) >droEre2.scaffold_4820 3231876 91 + 10470090 -----UCCGGUUCUUUUCUGU------CCACGGUUGUGGUCCAUCUCCACU-UGCCUAACGGCAAACUGGGAGCCUCAACAAUGGUACAUUAGCCUGGGCCAG -----...(((((.((..(((------(((..((((.(((...((.(((.(-((((....)))))..)))))))).))))..))).)))..))...))))).. ( -31.80, z-score = -2.29, R) >droAna3.scaffold_13340 4857538 101 + 23697760 UCCUGUUCCGCCCUCCUGUCAUAAUG-UCAGUGCCAUGUCUUUUCCGUUCUGAGCCUAACGGCAAAAUGUUAGCC-CAACAAUGAGACAUUAGCCUGGGCCAG .........((((..(((.(.....)-.))).((.(((((((...........(((....)))....((((....-.))))..)))))))..))..))))... ( -23.90, z-score = -1.25, R) >consensus _____ACCGGCUCUUUUCUGGUUCUGGCCAUGGUUGUGGUCCAUCGCCACU_UGCCUAACGGCAAAAUGGAAGCCUUAACAAUGGGACAUUAGCCUGGGCCAG ........(((((......(((....)))..(((((((..((((..(((...((((....))))...)))..(......).))))..)).))))).))))).. (-18.86 = -19.18 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:05 2011