| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,812,954 – 20,813,008 |
| Length | 54 |
| Max. P | 0.514072 |
| Location | 20,812,954 – 20,813,008 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 69.39 |
| Shannon entropy | 0.49274 |
| G+C content | 0.33003 |
| Mean single sequence MFE | -9.47 |
| Consensus MFE | -4.93 |
| Energy contribution | -5.05 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20812954 54 + 27905053 GAAAUUCUCAUUGUUACUUGUUCAAAUGAAUUUCAAUGAACAUUUCC--ACCGUGU (((((..((((((......((((....))))..))))))..))))).--....... ( -9.40, z-score = -1.63, R) >droYak2.chr3R 3146134 54 - 28832112 GAAAUUCUUAUUGUUAUUCGUUCGAAUGCAUUUCAAUGGACAUUUUC--ACCGUGU ((((.(((.((((.(((((....))))).....)))))))...))))--....... ( -6.10, z-score = 0.41, R) >droEre2.scaffold_4820 3230003 54 - 10470090 GAACUUCUUAUUGUUAUUCGUUCUAAUGAAUUUCAAUGAACAUUUCC--ACCGUGU .......((((((..((((((....))))))..))))))........--....... ( -8.40, z-score = -1.88, R) >droMoj3.scaffold_6540 5225303 56 - 34148556 GAAAUAGUUUUUCCUGGCUAUUUAAUUUAUGUGGAAAGGCCAUUUACUGGCCACUU .((((((((......))))))))..............(((((.....))))).... ( -14.00, z-score = -1.81, R) >consensus GAAAUUCUUAUUGUUAUUCGUUCAAAUGAAUUUCAAUGAACAUUUCC__ACCGUGU (((((..((((((..((((((....))))))..))))))..))))).......... ( -4.93 = -5.05 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:04 2011