| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,809,822 – 20,809,894 |
| Length | 72 |
| Max. P | 0.946478 |
| Location | 20,809,822 – 20,809,894 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.48485 |
| G+C content | 0.50729 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -10.59 |
| Energy contribution | -11.37 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20809822 72 + 27905053 GAUUGGUAUUGGACAGCACUUCGACCGACCACCGGGAGCGGGUGG-UUUUUGUUCCCGGCUUUUCUUUAUGCC ....(((((.(((.(((...((....))....((((((((((...-..))))))))))))).)))...))))) ( -22.60, z-score = -1.03, R) >droSec1.super_33 71188 68 + 478481 GAUUGGUAUUGGACAGCACUUCGACUG----CCGGGAGCGGGUGG-UUUUUGUUCCCGGCUUUUCUUUAUGCC ....(((((.(((.((........))(----(((((((((((...-..))))))))))))...)))..))))) ( -23.70, z-score = -2.06, R) >droYak2.chr3R 3142764 68 - 28832112 GAUUGGUAUUGGACAGCAGUUCGAGUG----CCGGGAGCGGGUGG-UUUUUGUUCCCGGCUUUUCUUUAUGCC ....(((((.((((....))))(((.(----(((((((((((...-..))))))))))))..)))...))))) ( -27.30, z-score = -3.29, R) >droEre2.scaffold_4820 3226767 68 - 10470090 GAUUGGUAUUGGACAGCACUUCGAGUGA----CGGGAGCGGGUGG-UUUUUGUUCCCGGCUUUUCUUUAUGCC ....(((((.(((.(((((.....))..----((((((((((...-..))))))))))))).)))...))))) ( -22.60, z-score = -1.99, R) >droAna3.scaffold_13340 4852271 63 - 23697760 ------UGGAGGAAAGCUGUUCGAGCUA---CUUCGAGCGGGUGG-UUUUUAUUCCUUGCUUUCUUUAUUGUU ------..(((((((((.(((((((...---.)))))))(((...-.......)))..)))))))))...... ( -19.00, z-score = -2.11, R) >dp4.chr2 19865866 64 - 30794189 GAUUGGCAUCGGAAACGUAUGGGGAAG----CUGGGAGCGGGUGGGUUUUUGUUCUUUGCUUCUUUCU----- ......(((((....)).)))((((((----(..((((((((......))))))))..)))))))...----- ( -22.40, z-score = -3.19, R) >consensus GAUUGGUAUUGGACAGCACUUCGAGUG____CCGGGAGCGGGUGG_UUUUUGUUCCCGGCUUUUCUUUAUGCC ...............................(((((((((((......))))))))))).............. (-10.59 = -11.37 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:02 2011