| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,583,122 – 8,583,232 |
| Length | 110 |
| Max. P | 0.671865 |
| Location | 8,583,122 – 8,583,232 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.82 |
| Shannon entropy | 0.61108 |
| G+C content | 0.38664 |
| Mean single sequence MFE | -20.49 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.38 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8583122 110 + 23011544 --CAAGCACACAUAAAUAAGGGAAGAGC-CAAAUCU--AGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAACGAAAUACUUAUUACUUAGUAACAAAAAGAAA --(((((((..........((......)-)...(((--(((.....--((....)).))))))))))))).(((....))).........((((........))))........... ( -19.90, z-score = -0.75, R) >droSim1.chr2L 8372265 110 + 22036055 --CAAGCACACAUAAAUAAGGGAAGAGC-CAAAUCU--AGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAACGAAAUACUUAUUACUUAGUAACAAAAAGAAA --(((((((..........((......)-)...(((--(((.....--((....)).))))))))))))).(((....))).........((((........))))........... ( -19.90, z-score = -0.75, R) >droSec1.super_3 4070027 110 + 7220098 --CAAGCACACAUAAAUAAGGGAAGAGC-CAAAUCU--AGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAAGAAAUACUUAUUACUUAGUAACAAAAAGAAA --(((((((..........((......)-)...(((--(((.....--((....)).))))))))))))).(((....))).........((((........))))........... ( -19.90, z-score = -0.76, R) >droYak2.chr2L 11231284 109 + 22324452 ---CAGCACACAUAAAUAAGGGAAGAGC-CAAAUCU--GGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACUUAUUACUUAGUAACAAAAGGAAA ---..(((.((((......((......)-)...((.--.((.....--((....)).))..)))))).)))(((....))).........((((........))))........... ( -18.90, z-score = 0.29, R) >droEre2.scaffold_4929 9179395 110 + 26641161 --CAAGCACACAUAAAUAAGGGAAGAGC-CAAAUCU--AGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACUUAUUACUUAGUAACAAAAAGAAA --(((((((..........((......)-)...(((--(((.....--((....)).))))))))))))).(((....))).........((((........))))........... ( -19.90, z-score = -0.54, R) >droAna3.scaffold_12916 10228051 111 + 16180835 UACACAUACACAAAAAUAAGG-AAGAGC-CAAAUCU--GGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAAACAUAUUACUUGGCAACAAAAAGCAU .....................-....((-(((.((.--...))(((--((((((((.......))))))))(((....)))...........))).....)))))............ ( -20.60, z-score = -0.38, R) >dp4.chr4_group5 1341192 96 - 2436548 --AACCAACACGGGGACGGGAGGGAGAU-UGUAUCUAGGGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACAUAAUACU---------------- --..((..(.((....)))..)).....-(((((............--((((((((.......))))))))(((....)))........))))).......---------------- ( -22.50, z-score = -1.56, R) >droPer1.super_5 1311860 96 - 6813705 --AGCCAACACGGGGAUGGGAGGGAGUU-UGUAUCUAGGGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACAUAAUACU---------------- --..((..(....(((((.(((....))-).))))).)..)).(((--((((((((.......))))))))(((....)))...........)))......---------------- ( -20.90, z-score = -0.31, R) >droWil1.scaffold_181071 209222 102 - 1211509 ----------CCAGCACCAAUAGAAA---UAAAAAACUAGGGAAUG--GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACAUAAUACUUAGCAACAAAAUAAAA ----------................---.......(((((..(((--((((((((.......))))))))(((....)))...........)))....)))))............. ( -17.90, z-score = -0.74, R) >droVir3.scaffold_12963 14419320 106 - 20206255 ----GCUGCACAUGGCCCUAUAGAAACCGUCAAGCAUUUAGGUAUGGGGCAAAUGCAUUUGGAGUGUUUGCGGCAA-UGCCAAAAUGAAAUACAUAAUACUUAGCAACAAA------ ----((((((....(((((((....(((............))))))))))...))).....(((((((...(((..-.)))...(((.....)))))))))))))......------ ( -25.40, z-score = 0.20, R) >droMoj3.scaffold_6500 7440230 101 - 32352404 ---------GCUCCGCCUGGCGUAGAGUAGAAGUAUUUUUGGAAUGGGGCAAAUGCAUUUGGAGUGUUUGCGGCAA-UGCCAAAAUGAAAUACAUAAUACUUAGCAACAAA------ ---------(((......)))((.(((((...((((((((((..((..((((((((.......))))))))..)).-..)))....)))))))....))))).))......------ ( -23.60, z-score = 0.19, R) >droGri2.scaffold_15252 7664616 88 + 17193109 ----------------------GAAACCGUAAAACAUUUGGGGAUGGGGCAAAUGCAUUUGGAGUGUUUGCGGCAA-UGCCAAAAUGAAAUACAUAAUACUUAGCAGCAAA------ ----------------------......(((...(((((((.(.((..((((((((.......))))))))..)).-).)).)))))...)))..................------ ( -16.50, z-score = 0.55, R) >consensus ___AAGCACACAUAAAUAAGGGAAGAGC_CAAAUCU__AGGGAAUG__GCAAAUGCAUUUGGAGUGUUUGCGGCAAAUGCCAAAAUGAAAUACAUAAUACUUAGCAACAAAA_GAAA ................................................((((((((.......))))))))(((....))).................................... (-13.10 = -13.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:23 2011