| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,807,923 – 20,808,034 |
| Length | 111 |
| Max. P | 0.715712 |
| Location | 20,807,923 – 20,808,034 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.52 |
| Shannon entropy | 0.36095 |
| G+C content | 0.28391 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.17 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20807923 111 + 27905053 AGAAUUUCAUUAUAACACUUAUGAUUACGGCAAUCAGAAUUGAUCACAUUUACAAAAUACUUUUAUUGUUAAUAAAGUAUUUAUUAAAUGCGUGUAAGCUCCUUGAAUCAG .((..((((.....((((...((((((...(.....)...))))))((((((..(((((((((..........)))))))))..)))))).))))........)))))).. ( -15.52, z-score = -0.46, R) >droSec1.super_33 69267 89 + 478481 ----------------------GCUUAUGGCAAUCAAAAUUGAUCACAUUUACAAAAUACUUUUAUUGUUAAUAGAGUAUUUAUUAAGUGCGUGUAAGCUGGCCGAAUCAG ----------------------((((((((((((....)))).)).((((((..(((((((((..........)))))))))..))))))...))))))............ ( -15.50, z-score = -0.46, R) >droSim1.chr3R 20639548 87 + 27517382 ------------UAACACUCAUGCUUAUGGCAAUCAAAAUUGAUCACAUUUACAGAAUACUUUUAUUGUUAAUAGAGUAUUUAUUAAAUGCGUGUAAGC------------ ------------..((((...(((.....)))..............((((((..(((((((((..........)))))))))..)))))).))))....------------ ( -15.40, z-score = -1.01, R) >consensus ____________UAACACU_AUGCUUAUGGCAAUCAAAAUUGAUCACAUUUACAAAAUACUUUUAUUGUUAAUAGAGUAUUUAUUAAAUGCGUGUAAGCU____GAAUCAG ......................((((((((((((....)))).)).((((((..(((((((((..........)))))))))..))))))...))))))............ (-14.71 = -14.17 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:42:01 2011