| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,805,995 – 20,806,045 |
| Length | 50 |
| Max. P | 0.944444 |
| Location | 20,805,995 – 20,806,045 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 93.00 |
| Shannon entropy | 0.11358 |
| G+C content | 0.48500 |
| Mean single sequence MFE | -13.12 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20805995 50 + 27905053 UUUAACUUAACUUUGUCGUCAUCACCGUGUUUGGCCGACGGCAAUCUGUG .........((.((((((((....(((....)))..))))))))...)). ( -11.90, z-score = -1.68, R) >droSim1.chr3R 20637643 50 + 27517382 UUUAACUUAACUUUGUCGUCAUCGCCGAGUUUGGCCGACGGCAAUCUCUG ............((((((((...((((....)))).))))))))...... ( -14.40, z-score = -2.78, R) >droSec1.super_33 67380 50 + 478481 UUUAAGUUAACUUUGUCGUCAUCGCCGAGUUUGGCCGACGGCAAUCUGUG .........((.((((((((...((((....)))).))))))))...)). ( -14.80, z-score = -2.24, R) >droEre2.scaffold_4820 3222925 50 - 10470090 UUUAACCCAACUUUGUCGUCAUCGCCGAGUUUGGCCCACGGCAAUCUGUG .........((.(((((((....((((....))))..)))))))...)). ( -11.40, z-score = -1.23, R) >consensus UUUAACUUAACUUUGUCGUCAUCGCCGAGUUUGGCCGACGGCAAUCUGUG ............((((((((...((((....)))).))))))))...... (-12.20 = -12.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:58 2011