| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,802,094 – 20,802,214 |
| Length | 120 |
| Max. P | 0.957028 |
| Location | 20,802,094 – 20,802,214 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.75 |
| Shannon entropy | 0.23716 |
| G+C content | 0.36025 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -24.48 |
| Energy contribution | -23.36 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20802094 120 - 27905053 CACUAUUUUAUUAACAACAGCAUUAACAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGCUGUGCC ................(((((........(((((((.......)))))))((((.......((((.(((((((..(((((...)))))..))))).))...))))...)))))))))... ( -27.10, z-score = -2.08, R) >droEre2.scaffold_4820 3219043 106 + 10470090 ------------CAUUAUUUUAUUAAGACUGAGCUUUUACACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAA-CA-UUUUAUUGCCCGGCUAACAGACUAUUUCAGCUGCGCC ------------(((((...((((.....(((((((.......)))))))..)))).))))).......((((..(((.-..-..)))..))))(((...(((.((.....))))).))) ( -21.00, z-score = -1.09, R) >droYak2.chr3R 3134881 120 + 28832112 CACUAUUUUAUUGACAACAGCAUUAAGAUUGAGCUUAUUCACCAGGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUGGCCCAGCUAACAGACUAUUUCAGUUGAGCC ..............((((.(((((((...(((((((.......)))))))......))))))).(((.((((((.(((((...))))).)))))).))).............)))).... ( -28.20, z-score = -1.65, R) >droSec1.super_33 63549 120 - 478481 CACUAUUUUAUUAACAACAGCAUUAAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUGAAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCC .............(((((.(((((((...(((((((.......)))))))......))))))).((((.((((..(((((...)))))..))))((((....))))..)))))))))... ( -28.60, z-score = -2.26, R) >droSim1.chr3R 20633821 120 - 27517382 CACUAUUUUAUUAACAACAGCAUUAAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUGGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCC ................(((((........(((((((.......)))))))((((.......(((((..(((((..(((((...)))))..))))).....)))))...)))))))))... ( -28.30, z-score = -1.88, R) >consensus CACUAUUUUAUUAACAACAGCAUUAAGAUUGGGCUUAUUCACCAAGCUCAUGAAUAUUAAUGUCUAGAUGGGUCUUAAAGCAUUUUUAUAGCCCAGUCAACAGACUAUUUCAGUUGUGCC .................((((........(((((((.......)))))))((((......(((.(((.(((((..((((.....))))..))))).))))))......)))))))).... (-24.48 = -23.36 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:58 2011