| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,797,663 – 20,797,767 |
| Length | 104 |
| Max. P | 0.807759 |
| Location | 20,797,663 – 20,797,767 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 87.31 |
| Shannon entropy | 0.22506 |
| G+C content | 0.56095 |
| Mean single sequence MFE | -13.41 |
| Consensus MFE | -12.48 |
| Energy contribution | -12.32 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20797663 104 - 27905053 GCACUCCACUUGUGCCCGAUCCCGUUCCCGUU-UACCACU-----ACCGUACCCAUCCCAUUCCCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......))))..((((........(..-(((....-----...)))..)(((........)))...))))..(((.(((....((((.....))))))).))).. ( -14.10, z-score = -1.47, R) >droSim1.chr3R 20629433 104 - 27517382 GCACUCCACUUGUGCCCGAUCCCGUUCCCGUU-UACCACU-----ACCAUAGCCAUCCCAUGCCCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......)))).................-.......-----......((((......((..(((....)))....)).......((((.....))))))))..... ( -14.40, z-score = -0.86, R) >droSec1.super_33 59170 104 - 478481 GCACUCCACUUGUGCCCGAUCCCGUUCCCGUU-UACCACU-----ACCAUACCCAUCCCAUACCCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......))))..((((....((..((.-.......-----................))..))....))))..(((.(((....((((.....))))))).))).. ( -12.96, z-score = -1.32, R) >droYak2.chr3R 3130174 92 + 28832112 GCACUCCACUUGUGCCCGUUCCCGUUCCCGUU-C-CCAUU-----ACCA--------CCA---CCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......)))).................-.-.....-----....--------(((---(.(((....)))..............(((.....)))))))...... ( -12.50, z-score = -1.25, R) >droEre2.scaffold_4820 3214701 110 + 10470090 GCACUCCACUUGUGCCCGUUCCCAUUACCACUACACCACUAUACCACUGUACCAUUCCCGAACCCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......))))..((((..........((((............))))........))))..(((....)))..(((.(((....((((.....))))))).))).. ( -13.07, z-score = -1.13, R) >consensus GCACUCCACUUGUGCCCGAUCCCGUUCCCGUU_UACCACU_____ACCAUACCCAUCCCAUACCCGAUCCCGAUCCCUUGCCCAAUUCCGCUUAAUUAGCGUGGCCAAAG ((((.......))))....................((((..........................(((....)))..............(((.....)))))))...... (-12.48 = -12.32 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:57 2011