Locus 11383

Sequence ID dm3.chr3R
Location 20,787,576 – 20,787,714
Length 138
Max. P 0.701064
window15647

overview

Window 7

Location 20,787,576 – 20,787,714
Length 138
Sequences 5
Columns 145
Reading direction forward
Mean pairwise identity 95.86
Shannon entropy 0.07368
G+C content 0.52642
Mean single sequence MFE -44.16
Consensus MFE -39.78
Energy contribution -40.58
Covariance contribution 0.80
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.701064
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20787576 138 + 27905053
CGUUU-GUCGAUUCUUAUCCGAGUUGUGCAGAAGCCCCGCCAGAUCCACAUCAACAUCCACAUCC------GCUGACCUAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
.....-..((((((......))))))(((((....((((((.(((....)))........(.(((------(((.((((((.((....)).)))))).((......)).........)))))).)))))))(....)..))))). ( -41.10, z-score =  -0.88, R)
>droSim1.chr3R 20619404 145 + 27517382
CGUUUUGUCGAUUCUUAUCCGACUUGUGCAGAAGCCCCGCCAGAUCCACAUCUACAUCCACAUCCACAUCCGCGGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
......((((.........))))...(((((....((((((((((....)))).............(.(((((..((((((.((....)).)))))).((......))..........))))).)))))))(....)..))))). ( -42.90, z-score =  -1.15, R)
>droSec1.super_33 49120 145 + 478481
CGUUUUGUCGAUUCUUAUCCGAGUUGUGCAGAAGCCCCGCCAGAUCCACAUCUACAUCCACAUCCACAUCCGCGGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
((((((((((((((......)))))).)))))(((((.(((((((....)))).............(.(((((..((((((.((....)).)))))).((......))..........))))).))))))))).)))........ ( -43.80, z-score =  -1.08, R)
>droYak2.chr3R 3120075 145 - 28832112
CGUUUUGCCGAUUCUUAUCCGAGUUGUGCAGAAGCACCGCCAGAUCCACAUCUACAUCCACAUCCACAUCCGCAGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
((((((((((((((......)))))).)))))(((.(((((((((....)))).............(.(((((..((((((.((....)).)))))).((......))..........))))).))))))))).)))........ ( -46.50, z-score =  -2.52, R)
>droEre2.scaffold_4820 3203671 145 - 10470090
CGUUUUGCCGAUUCUUAUCCGAGUUGUGCAGAAGCACCGCCAGAUCCACAUCUACAUCCACAUCCACAUCCGCAGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
((((((((((((((......)))))).)))))(((.(((((((((....)))).............(.(((((..((((((.((....)).)))))).((......))..........))))).))))))))).)))........ ( -46.50, z-score =  -2.52, R)
>consensus
CGUUUUGUCGAUUCUUAUCCGAGUUGUGCAGAAGCCCCGCCAGAUCCACAUCUACAUCCACAUCCACAUCCGCAGACCCAUGGGUACACCAAUGGGUACAAUUUACUGAUAAUCGCAAGCGGACGGGCGGGCUAACGACCUGCAA
((((((((((((((......)))))).)))))(((.(((((((((....))))...............(((((..((((((.((....)).)))))).((......))..........)))))..)))))))).)))........ (-39.78 = -40.58 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:55 2011