| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,780,202 – 20,780,299 |
| Length | 97 |
| Max. P | 0.552071 |
| Location | 20,780,202 – 20,780,299 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 95.05 |
| Shannon entropy | 0.08469 |
| G+C content | 0.44124 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -21.74 |
| Energy contribution | -23.74 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20780202 97 + 27905053 ACGGAUCAGAAUGGAGCGAAGUGGGAUGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCAUUUCAUUUCGGGUUGAAUAAAACAAUAAACAGAG .....((((..(((((.(((((((..(((.(((...(((....)))....)))..)))..))))))).)))))..)))).................. ( -23.60, z-score = -1.25, R) >droSim1.chr3R 20612097 97 + 27517382 ACGGAUCAGAAUGGAGCGAAGUGGGAUGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCAUUUCAUUUCGGGUUGAAUAAAACAAUAAACAGAG .....((((..(((((.(((((((..(((.(((...(((....)))....)))..)))..))))))).)))))..)))).................. ( -23.60, z-score = -1.25, R) >droSec1.super_33 41737 97 + 478481 ACGGAUCAGAAUGGAGCGAAGUGGGAUGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCAUUUCAUUUCGGGUUGAAAAAAACAAUAAACAGAG .....((((..(((((.(((((((..(((.(((...(((....)))....)))..)))..))))))).)))))..)))).................. ( -23.60, z-score = -1.19, R) >droYak2.chr3R 3112551 97 - 28832112 GCGGAUCAGAAUGGAGCGGGAUGGAAUGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCAUUUCAUUUCGGGUUGAAUAAAACAAUAAACAGAG .....((((..(((((.(..(((((.(((.(((...(((....)))....)))..))).)))))..).)))))..)))).................. ( -23.60, z-score = -1.25, R) >droEre2.scaffold_4820 3196306 97 - 10470090 GCGGAUCAGAACGGAGGGGAAUGGAAGGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCGUUUCAUUUCGGGUUGAAUAAAACAAUAAACAGAG .....((((..(((((.((((((((((.(.(((...(((....)))....)))).))..)))))))).)))))..)))).................. ( -25.50, z-score = -1.74, R) >consensus ACGGAUCAGAAUGGAGCGAAGUGGGAUGGAGCACUUGACGUGAGUUUAACUGCCGCUACUUCAUUUCAUUUCGGGUUGAAUAAAACAAUAAACAGAG .....((((..(((((.((((((((.(((.(((...(((....)))....)))..))).)))))))).)))))..)))).................. (-21.74 = -23.74 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:54 2011