| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,776,069 – 20,776,159 |
| Length | 90 |
| Max. P | 0.656949 |
| Location | 20,776,069 – 20,776,159 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 77.30 |
| Shannon entropy | 0.42640 |
| G+C content | 0.49732 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -12.63 |
| Energy contribution | -12.25 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20776069 90 - 27905053 -CAUUGGUUGGGAUGGA---AAGAUGACUAGAUGACU-CGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCU-CCCGACCGAAUGGAACAUGGAA -(((((((((((((((.---.......)))(((((((-(((((..((.......))....)))))))))))))-))))))).)))).......... ( -34.70, z-score = -3.77, R) >droSim1.chr3R 20607985 90 - 27517382 -CAUUGGUUGGGAUGGC---UAGAUGACUAGAUGACU-CGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCU-CCCGACCGAAUGGAACAUGGAA -((((((((((((((((---.....).)))(((((((-(((((..((.......))....)))))))))))))-))))))).)))).......... ( -35.20, z-score = -3.74, R) >droSec1.super_0 21118470 90 - 21120651 -CAUUGGUUGGGAUGGC---UAGAUGACUUUAUGACU-CGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCU-CCCGACCGAAUGGAACAUGGAA -((((((((((((.(((---.....).))..((((((-(((((..((.......))....))))))))))).)-))))))).)))).......... ( -29.40, z-score = -1.99, R) >droYak2.chr3R 3108341 93 + 28832112 CAUUGGGAUGGGAUGCC--AAAGAUGACUAGAUGACUAUGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCU-CCCGUCCGAAUGGAACAUGGAA ((((.((((((((....--...(((((((.(((((((.......)))))))....(((....)))))))))))-))))))).)))).......... ( -33.01, z-score = -2.65, R) >droEre2.scaffold_4820 3192128 90 + 10470090 -CAUUGGAUGGGAUGGC---AAGAUGACUAGAUGACU-CGGGGAGGUUAUCCACACAAUGCCUUGAGUCAUCU-CCCGAUCGAAUGGAACAUGGAA -((((.(((((((((((---.....).)))(((((((-(((((..((.......))....)))))))))))))-))).))).)))).......... ( -31.30, z-score = -2.17, R) >droAna3.scaffold_13340 4818942 70 + 23697760 ------CAUUGGAUGGU---UAGAUGACU-------C-CGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCUCCCCGAUC--AUGGAA------- ------(((.((.(((.---.((((((((-------(-.(((.(.((.....))....).))).)))))))))..))).))--)))...------- ( -23.90, z-score = -1.52, R) >dp4.chr2 19834064 81 + 30794189 ------CAUUGGCCGACCGACGGAUGACU---------GCGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCUCCCGCCCCGAAUAGAACAUGGAA ------..(((((((.....)))......---------(((((((((..((((.........))))...))))))))).))))............. ( -22.40, z-score = -0.55, R) >droPer1.super_0 9507442 81 - 11822988 ------CAUUGGCCGACCGACGGAUGACU---------GCGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCUCCCGCCCCGAAUAGAACAUGGAA ------..(((((((.....)))......---------(((((((((..((((.........))))...))))))))).))))............. ( -22.40, z-score = -0.55, R) >consensus _CAUUGGAUGGGAUGGC___AAGAUGACUAGAUGACU_CGGGGAGGUUAUCAACACAAUGCCUUGAGUCAUCU_CCCGACCGAAUGGAACAUGGAA .........(((.........((((((((.............(((((............))))).)))))))).)))................... (-12.63 = -12.25 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:51 2011