| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,577,334 – 8,577,386 |
| Length | 52 |
| Max. P | 0.579977 |
| Location | 8,577,334 – 8,577,386 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 85.77 |
| Shannon entropy | 0.25387 |
| G+C content | 0.40497 |
| Mean single sequence MFE | -7.15 |
| Consensus MFE | -5.56 |
| Energy contribution | -5.88 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8577334 52 + 23011544 UUUAUGUGAACCUAAAACUAAACCACAUAGAGAGUAACUACCCUGCUGAAAC ((((((((...............)))))))).((((.......))))..... ( -6.36, z-score = -2.35, R) >droEre2.scaffold_4929 9173490 51 + 26641161 UUUAUGUGGACCUAAACCUAACCCACAUAGAGACUAACUACCCUGCAGAGC- (((((((((.............)))))))))....................- ( -9.02, z-score = -2.39, R) >droYak2.chr2L 11225379 50 + 22324452 UUUAUGUGGACCUAAACCUAAACCA--UAGAGACUAACAACCCUGCUGAAGC ....(((((.............)))--))....................... ( -2.72, z-score = 0.58, R) >droSec1.super_3 4064205 52 + 7220098 UUUAUGUGGAUCUAAACGUAACCCAUGUAGAGAGUAACUACCCUGCUGAAAC (((((((((.............))))))))).((((.......))))..... ( -6.92, z-score = -0.49, R) >droSim1.chr2L 8366451 52 + 22036055 UUUAUGUGGAUCUAAACGUAACCCAUAUAGACAGUAACUACCCUGCUGAAAC (((((((((.............)))))))))(((((.......))))).... ( -10.72, z-score = -2.72, R) >consensus UUUAUGUGGACCUAAACCUAACCCACAUAGAGAGUAACUACCCUGCUGAAAC (((((((((.............)))))))))..................... ( -5.56 = -5.88 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:22 2011