| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,748,361 – 20,748,412 |
| Length | 51 |
| Max. P | 0.969687 |
| Location | 20,748,361 – 20,748,412 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Shannon entropy | 0.38822 |
| G+C content | 0.51961 |
| Mean single sequence MFE | -13.80 |
| Consensus MFE | -12.82 |
| Energy contribution | -12.43 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20748361 51 + 27905053 UCAUUACUGAAGAUAAUCGCCCAAACGAUGUCGGCGUCUUGGCGCCGAACG ...............((((......)))).(((((((....)))))))... ( -15.10, z-score = -1.83, R) >droAna3.scaffold_13340 4796569 51 - 23697760 AAAUUAUUAUAGAAACCCCAUUAAUUGAUGGCGUUGCCGCGGCGUCGCAAG ..................((((....))))(((.(((....))).)))... ( -9.50, z-score = 0.00, R) >droEre2.scaffold_4820 3169238 51 - 10470090 CCAAUACUGUAGAUAAUCCCGCAAACGAUGUCGGCGUCUUGGCGCCGAACG .......((..(......)..))..((...(((((((....))))))).)) ( -13.60, z-score = -1.28, R) >droYak2.chr3R 3085595 51 - 28832112 CUAUCACUGAAGAUAAUCCCCCAAACGAUGUCGGCGUCUUGGCGCCGAACG .((((......))))..........((...(((((((....))))))).)) ( -14.40, z-score = -2.31, R) >droSec1.super_33 7513 51 + 478481 UCAUUACUGAAGAUAAUCGCCCAAACGAUGUCGGCGUCUUGGCGCCGAACG ...............((((......)))).(((((((....)))))))... ( -15.10, z-score = -1.83, R) >droSim1.chr3R 20584025 51 + 27517382 UCAUUAUAGAAGAUAAUCGCCCAAACGAUGUCGGCGUCUUGGCGCCGAACG ...............((((......)))).(((((((....)))))))... ( -15.10, z-score = -1.84, R) >consensus UCAUUACUGAAGAUAAUCCCCCAAACGAUGUCGGCGUCUUGGCGCCGAACG ..............................(((((((....)))))))... (-12.82 = -12.43 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:50 2011