| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,744,268 – 20,744,349 |
| Length | 81 |
| Max. P | 0.531173 |
| Location | 20,744,268 – 20,744,349 |
|---|---|
| Length | 81 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 73.02 |
| Shannon entropy | 0.48231 |
| G+C content | 0.39491 |
| Mean single sequence MFE | -16.19 |
| Consensus MFE | -7.90 |
| Energy contribution | -8.00 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20744268 81 - 27905053 AGGUAGCUACACAGGAGCAGAAGAACACAUGUCAAGUUGUUUAGUUUAGCUUUUGCUCCGAUUCCAACACAAUGAGAUCAU .............((((((((((((((((........)))...)))...))))))))))(((..((......))..))).. ( -19.10, z-score = -1.70, R) >droSim1.chr3R 20579915 77 - 27517382 AGGUAGCUACACAGGAGCAGAAGAACACAUGUCAAGUUG----AUUUAGCUUUUGCUCCGAUUCCAACACAAUGAGAUCAU .............((((((((((.......(((.....)----))....))))))))))(((..((......))..))).. ( -20.60, z-score = -2.76, R) >droSec1.super_33 3393 77 - 478481 AGGUAGCUACACAGGAGCAGAAGAACACAUGUCAAGUUG----AUUUAGCUUUUGCUCCGAUUCCAACACAAUGAGAUCAU .............((((((((((.......(((.....)----))....))))))))))(((..((......))..))).. ( -20.60, z-score = -2.76, R) >droYak2.chr3R 3081248 75 + 28832112 AGGUAGCU--ACAGGAGCACAAAAACACAUGUCAUAUUG----AUUUAGCUUUUGCUCCGAUUCCAAGACAAUGAGAUCAU ........--...((((((...........(((.....)----))........))))))(((..((......))..))).. ( -13.31, z-score = -0.62, R) >droEre2.scaffold_4820 3164734 75 + 10470090 AGGUAGCU--ACAGGAGCAGAAAAACACAUGUCAUGUUG----AUUUAGCUUUUGCUCCGAUUCCAAGACAAUGAGAUCAU ........--...(((((((((........(((.....)----)).....)))))))))(((..((......))..))).. ( -16.52, z-score = -1.04, R) >dp4.chr2 19805325 69 + 30794189 GGAGAAAAAUAAAAGAGC-GAAGAGCGCACAU-----------GUUAGUGUCUUGUUCUACAUUGAAAGGAAUGAGAUCAU ................((-(.....)))....-----------....((((((..((((.........))))..))).))) ( -11.60, z-score = -0.56, R) >droPer1.super_0 9478583 69 - 11822988 AGAGAAAAAUAAAAGAGC-GAAGAGCGCACAU-----------GUUAGUGUCUUGUUCUACAUUGAAAGGAAUGAGAUCAU ................((-(.....)))....-----------....((((((..((((.........))))..))).))) ( -11.60, z-score = -0.57, R) >consensus AGGUAGCUACACAGGAGCAGAAGAACACAUGUCAAGUUG____AUUUAGCUUUUGCUCCGAUUCCAACACAAUGAGAUCAU .............(((((((((............................)))))))))...................... ( -7.90 = -8.00 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:47 2011