| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,737,967 – 20,738,065 |
| Length | 98 |
| Max. P | 0.799227 |
| Location | 20,737,967 – 20,738,065 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.25 |
| Shannon entropy | 0.48407 |
| G+C content | 0.47519 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -13.62 |
| Energy contribution | -13.49 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20737967 98 - 27905053 GACCCUA-AAAAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG-UAAACAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUC ..((((.-.......))))..((((((((((((((((........)))((((((((((-(.........)))))))).)))...))))))..))))))). ( -30.30, z-score = -1.80, R) >droSim1.chr3R 20572993 99 - 27517382 GACCCUAAAAAAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG-UAAACAGUUAAUUUUUAAUUGCUCACGGCUUGUUGGCUCUC ..((((........))))...((((((((((((((((........)))((((((((((-(.........)))))))).)))...)))))..)))))))). ( -28.80, z-score = -1.28, R) >droSec1.super_0 21085839 98 - 21120651 GACCCUA-AAAAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG-UAAACAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUC ..((((.-.......))))..((((((((((((((((........)))((((((((((-(.........)))))))).)))...))))))..))))))). ( -30.30, z-score = -1.80, R) >droYak2.chr3R 3074931 98 + 28832112 GACUCUA-AAAAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG-UAAACAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUC .......-.......((((((.((((((((((..((((........))))((((((((-(.........))))))))).)))).))))))....)))))) ( -27.40, z-score = -1.73, R) >droEre2.scaffold_4820 3158579 96 + 10470090 GACCCUA---AAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG-UAAACAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUC ..((((.---.....))))..((((((((((((((((........)))((((((((((-(.........)))))))).)))...))))))..))))))). ( -30.50, z-score = -1.78, R) >droAna3.scaffold_13340 4786687 88 + 23697760 ---------UGGCUGGGAGGAGAGGUCGAAGACGACGUC-GGCUUCG-GCGUUAAAAG-UAAAUAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUU ---------.(((..((((..((((((((........))-))))))(-((((((((((-(.........)))))))).)))).....))).)..)))... ( -24.40, z-score = -0.57, R) >droPer1.super_0 10469149 76 - 11822988 -----------------GGGAGCGGUCGGCGUCAAACUA-UGC-----GCAUUAAAAG-UAAAUAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCGCUC -----------------..(((((.((((((.....(..-((.-----((((((((((-(.........)))))))).))).))..)..))))))))))) ( -21.10, z-score = -1.66, R) >dp4.chr2 20780465 76 + 30794189 -----------------GGGAGCGGUCGGCGUCAAACUA-UGC-----GCAUUAAAAG-UAAAUAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCGCUC -----------------..(((((.((((((.....(..-((.-----((((((((((-(.........)))))))).))).))..)..))))))))))) ( -21.10, z-score = -1.66, R) >droMoj3.scaffold_6540 11688457 81 - 34148556 -----------------GACGCGGCCCAGCAUCGACGGCAAACUAUGGGCAUUAAAAACUAAAUAGUUAAUUUUUAAUUGCGCAUGGCUCGUUGAGUC-- -----------------(((((......)).(((((((....(((((.((((((((((.(((....))).))))))).))).))))).))))))))))-- ( -23.70, z-score = -2.22, R) >consensus GAC_CUA___AAAAAGGGGGCGGGGCCGGGGUCGGCGUCAAACUUUGCGCAUUAAAAG_UAAACAGUUAAUUUUUAAUUGCUCACGGCUCGUUGGCUCUC ...........................((((((((((...........((((((((((.(((....))).))))))).)))........)))))))))). (-13.62 = -13.49 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:45 2011