| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,715,412 – 20,715,517 |
| Length | 105 |
| Max. P | 0.506341 |
| Location | 20,715,412 – 20,715,517 |
|---|---|
| Length | 105 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.04 |
| Shannon entropy | 0.51682 |
| G+C content | 0.50638 |
| Mean single sequence MFE | -32.14 |
| Consensus MFE | -18.65 |
| Energy contribution | -20.97 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20715412 105 + 27905053 AGCACGUUUUUUUGUGCCCAAUCGUUGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU-UGCUGGCCACGUUGUGCGAUAGAUGCUCAUGU---UAUACCACUGGCC---------- .(((((......))))).......(((((((.((((((((((((..((......))...)-))))))))).))...)))))))..(((..((.---.....))..))).---------- ( -35.90, z-score = -1.20, R) >droWil1.scaffold_181130 3952581 85 - 16660200 --------------AGCACAUUCUU--UUGGCCCAGACCGA-GCGAGUGAGUAUGCAAAUGUGCUGAGAGUAU-GUGUG-UGUGUGUGUAUUU--UUAAGAUACUG------------- --------------.((((((.(((--(..((.((...((.-((......)).))....)).))..)))).))-)))).-.......(((((.--....)))))..------------- ( -20.70, z-score = -0.85, R) >droAna3.scaffold_13340 4763553 90 - 23697760 ------------------AGCACGUUUUUGUUGCUGGCUGACAAAAGCGAGUAUGCAAAU-UGCUGGCCACGUUUUGCGAUAGAUGCUAAGGUAGCCAUUCCGUCGUCC---------- ------------------((((....(((((((((.(((......))).)))).))))).-))))(((.((.((..(((.....))).)).)).)))............---------- ( -23.50, z-score = 0.36, R) >droEre2.scaffold_4820 3131707 104 - 10470090 AGCACGUUUUUU-GUGCCCAAUCGUGGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU-UGCUGGCCACGUUGUGCGAUAGAUGCCCAUGU---UAUUCCACUGGCC---------- .(((((.....)-))))...(((...(((((.((((((((((((..((......))...)-))))))))).))...))))).)))(((..((.---.....))..))).---------- ( -38.00, z-score = -1.44, R) >droYak2.chr3R 3051596 115 - 28832112 AGCACGUUUUUCUGUGCCCAAUCGUUGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU-UGCUGGCCACGUUGUGCGAUAGAUGCCCAUGU---UAUUCCACUGCUCUCCACUGGCC .(((((......))))).......(((((((.((((((((((((..((......))...)-))))))))).))...)))))))..(((..((.---...............))..))). ( -35.09, z-score = -0.47, R) >droSec1.super_0 21063444 105 + 21120651 AGCACGUUUUUUUGUGCCCAAUCGUUGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU-UGCUGGCCACGUUGUGCGAUAGAUGCUCAUGU---UAUACCACUGGCC---------- .(((((......))))).......(((((((.((((((((((((..((......))...)-))))))))).))...)))))))..(((..((.---.....))..))).---------- ( -35.90, z-score = -1.20, R) >droSim1.chr3R 20550487 105 + 27517382 AGCACGUUUUUUUGUGCCCAAUCGUUGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU-UGCUGGCCACGUUGUGCGAUAGAUGCUCAUGU---UAUACCACUGGCC---------- .(((((......))))).......(((((((.((((((((((((..((......))...)-))))))))).))...)))))))..(((..((.---.....))..))).---------- ( -35.90, z-score = -1.20, R) >consensus AGCACGUUUUUUUGUGCCCAAUCGUUGUCGCUGCUGGCCGGCAAAAGCCAGUAUGCAAAU_UGCUGGCCACGUUGUGCGAUAGAUGCUCAUGU___UAUACCACUGGCC__________ .(((((......))))).......(((((((.(((((((((((...((......)).....))))))))).))...))))))).................................... (-18.65 = -20.97 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:43 2011